View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13611_high_16 (Length: 259)
Name: NF13611_high_16
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13611_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 7089171 - 7088916
Alignment:
| Q |
1 |
cattattcacatgtcatactatatccctaagacaaaaaa-gaagaaaccatagtcataacaaactaccaaacatagcaacagcattaaccctcaaagaac |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
7089171 |
cattattcacatgtcatactatatccctaagacaaaaaaagaagaaaccatagtcataacaaactaccaa-catagcaacagcattcaccctcaaagaac |
7089073 |
T |
|
| Q |
100 |
aagaatgaaaacttttcacttgacacttttcacaacatttctgatctcatttaccaatttcctaacttgtttcgcaaacaacgacgtaacgattcagtta |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7089072 |
aagaatgaaaacttttcacttgacacttttcacaacatttctgatctcatttaccaatttcctaacttgttttgcaaacaacgacgtaacgattcagtta |
7088973 |
T |
|
| Q |
200 |
aacgacgacgtcctcggtttaattgtgttcaaatcagtcctccaagacccctcatct |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
7088972 |
aacgacgacgtcctcggtttaattgtgttcaaatcagacctccaagacccttcatct |
7088916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 7076235 - 7076112
Alignment:
| Q |
115 |
tcacttgacacttttcacaacatttctg--atctcatttaccaatttcctaacttgtttcgcaaacaacgacgtaacgattcagttaaacgacgacgtcc |
212 |
Q |
| |
|
||||| ||||||||||||||||||| | |||||| ||| | ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
7076235 |
tcactcgacacttttcacaacattttttttatctcacttatcggtttcctaacttgttttgcaaacaaggacgtaaccattcagttaaacgacgacgtcc |
7076136 |
T |
|
| Q |
213 |
tcggtttaattgtgttcaaatcag |
236 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
7076135 |
tcggcttaattgtgttcaaatcag |
7076112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 7076352 - 7076273
Alignment:
| Q |
1 |
cattattcacatgtcatactatatccctaagacaa-aaaagaagaaaccatagtcataacaaactaccaaacatagcaac |
79 |
Q |
| |
|
||||||||| |||| ||||| ||||| |||||||| ||||||||||| |||| | ||| |||||||||||| ||| |||| |
|
|
| T |
7076352 |
cattattcatatgtgatactgtatccttaagacaaaaaaagaagaaatcatactaatagcaaactaccaaatatatcaac |
7076273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University