View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13611_high_5 (Length: 488)
Name: NF13611_high_5
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13611_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 1432083 - 1432426
Alignment:
| Q |
13 |
aatattggtattgtcagttgagctaggccttagcatccactggttgccctttagctttatccgtattaggcatatgtttgattgaaaaataaacttcaca |
112 |
Q |
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| T |
1432083 |
aatattggtattgtcagttgagctaggccttagcatccactggttgccctttagctttatccgtattaggcatatgtttgattgaaaaataaacttcaca |
1432182 |
T |
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| Q |
113 |
ttaaacttggagtagtagcttttgtaatattcaatccaaatattctcnnnnnnngctaaataagataggatcatatgattgaagtattttagtgatattc |
212 |
Q |
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| T |
1432183 |
ttaaacttggagtagtagcttttgtaatattcaatc------tt----------gctaaataagataggatcatatgattgaagtattttagtgatattc |
1432266 |
T |
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| Q |
213 |
atatacgatgttgatgttgtgtgcatcactagattaggttgtttcttgattgttaagtgcttaatctcaaacgtcaccgattgaacagaattggtgatga |
312 |
Q |
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| T |
1432267 |
atatacgatgttgatgttgtgtgcatcactagattaggttgtttcttgattgttaagtgcttaatctcaaacgtcaccgattgaacagaattggtgatga |
1432366 |
T |
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| Q |
313 |
taatactttgtgattgtgtaagacttcataattatattagagaatggcttttcaatatgg |
372 |
Q |
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| T |
1432367 |
taatactttgtgattgtgtaagacttcataattatattagagaatggcttttcaatatgg |
1432426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 401 - 468
Target Start/End: Original strand, 1432456 - 1432523
Alignment:
| Q |
401 |
cttctcacatttgcttcaatgtatagtattatagttagcctagtatttaggtgtatgctactaaggct |
468 |
Q |
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| T |
1432456 |
cttctcacatttgctttgatgtatagtattatagttagcctagtatttaggtgtatgctactaaggct |
1432523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 1438080 - 1438175
Alignment:
| Q |
174 |
aagataggatcatatgattgaagtattttagtgatattcatatacgatgttgatgttgtgtgcatcactagattaggttgtttcttgattgttaagtg |
271 |
Q |
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| T |
1438080 |
aagataggatcatatgattgaagaattttagtaaatttcagatatagtgatggtgttctg--catcactagattaggttgtttcttgattgttcagtg |
1438175 |
T |
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