View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13611_low_1 (Length: 693)
Name: NF13611_low_1
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13611_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 26 - 629
Target Start/End: Complemental strand, 55696028 - 55695428
Alignment:
| Q |
26 |
atccctatgaatttcaaatttcagtcagtaaatagtgttttagagattgtgatgttggtatttctcattaggttttgacttcatacattcttgctcatgc |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
55696028 |
atccctatgaatttcaaatttcagtcagtaaatagtgttttagagattgtgatgttggtatttctcattaggttttgacttcacacattcttgctcatgc |
55695929 |
T |
|
| Q |
126 |
agcaaatctactccctatactcaattcaagatatcagttttagcatctcagatattatcattcttgcttttgtcctttcctttcagaagagaaaaacaaa |
225 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55695928 |
agcaaatctactccctatactcaattcaagatatcaattttagcatctcagatattatcattcttgcttttgtcctttcctttcagaagagaaaaacaaa |
55695829 |
T |
|
| Q |
226 |
attcaagccaactttttaaatcaaaattgcattatttttgtcatcagttgcagttttttaaggctctttaacttgccgtttgataatgtggttttatttc |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55695828 |
attcaagccaactttttaaatcaaaattgcattatttttgtcattagttgcagttttttaaggctctttaacttgccgtttgataatgtggttttatttc |
55695729 |
T |
|
| Q |
326 |
ataaaacccctttccaaaaacatgttttctaattatcttgtggtgcactcttcccctctttctgaaatcctgtgggtaaattatgatagagtttcggcnn |
425 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
55695728 |
ataaaatccctttccaaaaacatgttttctaattatcttgtggtgcactcttcccctctttctgaaatcctgtgagtaaattatgatagagttttggcaa |
55695629 |
T |
|
| Q |
426 |
nnnnnnnnnnnnnnntataatttattcaaaccaggagaaatacataatgaccaaacaagcttcagtggctatagctccttatataataataaatccgtaa |
525 |
Q |
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| T |
55695628 |
aataaaaaagtaaaatataatttattcaaaccaggagaaatacataatgaccaaacaagcttcagtggctatagctccttatataataataaatccgtaa |
55695529 |
T |
|
| Q |
526 |
agccatacccatagacttaccttcacaataagatcaatgacaaaagaaaccaaacaaataaagcggaaaagcttctcatcaactttgacatgtgaaaaaa |
625 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
55695528 |
agccatacccatag---taccttcacaataagatcaatgacaaaagaagccaaacaaataaagcagaaaagcttctcatcaactttgacatgtgaaaaaa |
55695432 |
T |
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| Q |
626 |
gtag |
629 |
Q |
| |
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|||| |
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| T |
55695431 |
gtag |
55695428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 649 - 683
Target Start/End: Complemental strand, 55695419 - 55695385
Alignment:
| Q |
649 |
tagactcctttctgatcactttttatgcttctgtg |
683 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
55695419 |
tagactcctttctgatcactttttatgcttctgtg |
55695385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 180 - 420
Target Start/End: Original strand, 35803815 - 35804064
Alignment:
| Q |
180 |
ttatcattcttgcttttgtcctttcctttcagaagagaaaaacaaaattcaagccaactttttaaatcaaaattgcattatttttgtc------------ |
267 |
Q |
| |
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|||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35803815 |
ttatcatt-ttgtttttgtcccttcctttcagaagagaaaaacaaaattcaagccaactttttaattcaaaattgcattatttttgttgtcatttttttt |
35803913 |
T |
|
| Q |
268 |
atcagttgcagttttttaaggctctttaacttgccgtttgataatgtggttttatttcataaaacccctttccaaaaacatgttttctaattatcttgtg |
367 |
Q |
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|||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||| |||||||||||| ||||||| |
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| T |
35803914 |
atcagttgcaatttt-taaggctctttaacttgccttttgataatgtggttttatttcttaaaatccctttacaaaagtttgttttctaattttcttgtg |
35804012 |
T |
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| Q |
368 |
gtgcactcttcccctctttctgaaatcctgtgggtaaattatgatagagtttc |
420 |
Q |
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|||||||| | |||||||||||||||||| |||||||||||||||||| |||| |
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| T |
35804013 |
gtgcactcct-ccctctttctgaaatcctttgggtaaattatgatagactttc |
35804064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 506 - 624
Target Start/End: Original strand, 35804198 - 35804319
Alignment:
| Q |
506 |
atataataataaatccgtaaagccatacccatagacttaccttcacaataagatcaatgacaaaa---gaaaccaaacaaataaagcggaaaagcttctc |
602 |
Q |
| |
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|||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||||||||||| |||||||||||| |
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| T |
35804198 |
atataataataattctgtaaagccatacccaaagacttaccttcaaaataagatcaatgaaaaaaaacaaaaccaaacaaataaaatagaaaagcttctc |
35804297 |
T |
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| Q |
603 |
atcaactttgacatgtgaaaaa |
624 |
Q |
| |
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|||||||||||| ||||||||| |
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| T |
35804298 |
atcaactttgacttgtgaaaaa |
35804319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 441 - 481
Target Start/End: Original strand, 35804087 - 35804127
Alignment:
| Q |
441 |
tataatttattcaaaccaggagaaatacataatgaccaaac |
481 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35804087 |
tataatttattcaaaccagaagaaatacataatgaccaaac |
35804127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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