View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13611_low_10 (Length: 417)
Name: NF13611_low_10
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13611_low_10 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 30514394 - 30513994
Alignment:
| Q |
18 |
ctctggtgcttccatggctacttcttttgcttctgtcactggtttcagtttattggtatgtttttctttgcttccatatcaaacttgttatgt-----tc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
30514394 |
ctctggtgcttccatggctacttcttttgcttctgtcactggtttcagtttattggtatgtttttctttgcttccatatcaaacttgttctgttctgttc |
30514295 |
T |
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| Q |
113 |
atcattattgttannnnnnnnnnnnnnnnnctgtatgtatgta----tgaaaattacacgtgagtggaaggcaaacatgacaacatgctacgctgctaag |
208 |
Q |
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| T |
30514294 |
atcattattgttatatgtgtgtgtgtgttattatatgtatgtacgtatgaaaatcacacgtgagtggaaggcaaacgtgacaacatgatacgctgctaag |
30514195 |
T |
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| Q |
209 |
tcttttgaaatgacaaaa-ccaatattcgtaaatataacattcatggacctagaaaacattaatgcgagtttgtgtgtgaagtatggttagagattgggt |
307 |
Q |
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| T |
30514194 |
tctttttaaatggcaaaaaccaatctttgtaaacagaacattgatggacctaggagacattaatgtgagtttgtgtgtgaagtatggttagatgttgggt |
30514095 |
T |
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| Q |
308 |
ctagcgtaagagactgatagctatttgcgatgttttaaattgttatttgaatatttgctaataaaagttgtatagatacagtgtgtgagtgattgatgat |
407 |
Q |
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| T |
30514094 |
ctagcgtaagagactgatagctatttgcgatgttttaaattgttatttgaatatttgctaataaaagttgtatagatacagtgtgtgagtgattgatgat |
30513995 |
T |
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| Q |
408 |
g |
408 |
Q |
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| T |
30513994 |
g |
30513994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 24706449 - 24706555
Alignment:
| Q |
18 |
ctctggtgcttccatggctacttcttttgcttctgtcactggtttcagtttattggtatgtttttctttgcttccatatcaaacttgttatgttcatcat |
117 |
Q |
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| T |
24706449 |
ctctggtgcttccatggctacttcttttgctgctgtcactggtttcactttattggttagttttcttctgcttcc-tatcaaactttttctcttcatcat |
24706547 |
T |
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| Q |
118 |
tattgtta |
125 |
Q |
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|||||||| |
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| T |
24706548 |
tattgtta |
24706555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 30489011 - 30488944
Alignment:
| Q |
18 |
ctctggtgcttccatggctacttcttttgcttctgtcactggtttcagtttattggtatgtttttctt |
85 |
Q |
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| T |
30489011 |
ctctggtgcttccatggctacttcttttgcttctgttactggtttcagtttattggtaagtttctctt |
30488944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 30503720 - 30503663
Alignment:
| Q |
18 |
ctctggtgcttccatggctacttcttttgcttctgtcactggtttcagtttattggta |
75 |
Q |
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| T |
30503720 |
ctctggtgcttccatggctacctcttttgcttctgttactggtttcagtttattggta |
30503663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 7524 - 7565
Alignment:
| Q |
218 |
atgacaaaaccaatattcgtaaatataacattcatggaccta |
259 |
Q |
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| T |
7524 |
atgacaaaaccaatactcgtaaacataacattcatggaccta |
7565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 6618206 - 6618247
Alignment:
| Q |
218 |
atgacaaaaccaatattcgtaaatataacattcatggaccta |
259 |
Q |
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| T |
6618206 |
atgacaaaaccaatactcgtaaacataacattcatggaccta |
6618247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 7257760 - 7257693
Alignment:
| Q |
200 |
gctgctaagtcttttgaaatgacaaaaccaatattcgtaaatataacattcatggacctagaaaacat |
267 |
Q |
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| T |
7257760 |
gctgttaagcctttttgaatgacaaaactaatcttcgtaaacacaacattcatggacctagaatacat |
7257693 |
T |
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