View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13611_low_11 (Length: 412)
Name: NF13611_low_11
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13611_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 22 - 393
Target Start/End: Complemental strand, 3309034 - 3308664
Alignment:
| Q |
22 |
aacgtgctaatacatatacagaaaatatatcaattaagatgattgttaat-gtcagagataaatgatagataccagatactaaagttgtttaatttgtga |
120 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3309034 |
aacgtgctaatacatatatagaaaatatatcaattgagatgattgttaatcgtcagagataaatgatagataccagatactaaagttgtttaatctgtga |
3308935 |
T |
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| Q |
121 |
tttatgatttgctcgtcggagtgtatacataaaaaacatatgctagtttgagtttggatactcaaactaannnnnnnnnnnnnnnnatatactccaaaac |
220 |
Q |
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||||||||||| || || |||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| |
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| T |
3308934 |
tttatgatttgatcttcacagtgtatacataaaaaacatatgctactttgagtttggatactca--ctaattttttaattttttttatatactccaaaac |
3308837 |
T |
|
| Q |
221 |
ggcatcgttttgttaccttaacgtctacgtagttggaatccatgctttacaactttgcttttctactttgatacacctagaaagttcatattctctctcc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308836 |
ggcatcgttttgttaccttaacgtctacgtagttggaatccatgctttacaactttgcttttctactttgatacacctagaaagttcatattctctctcc |
3308737 |
T |
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| Q |
321 |
ttttccaagcaataacattctccactaatacggcatcgtttcattgccttgacactgaagctttcaacccttc |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308736 |
ttttccaagcaataacattctccactaatacggcatcgtttcattgccttgacactgaagctttcaacccttc |
3308664 |
T |
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