View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13611_low_13 (Length: 386)
Name: NF13611_low_13
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13611_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 14757797 - 14757579
Alignment:
| Q |
20 |
ggatcattattacggaatgtgtgatccttattgaggtgaaatagcccaaacagaccaataatattcaagcaaatcacgttcatcggctttccggaacaca |
119 |
Q |
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| T |
14757797 |
ggatcgttattacagaatgtgtgatccttattgaggtgaaatagcccaaacagaccaataatattcaagcaaatcatgttcgtcggctttccggaacaca |
14757698 |
T |
|
| Q |
120 |
tctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatactctttcatcattcttgaagttggatgaggcat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14757697 |
tctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatactctttcatcattcttgaagttggatgaggcat |
14757598 |
T |
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| Q |
220 |
aataccacaacctacccca |
238 |
Q |
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||||||||||||||||||| |
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| T |
14757597 |
aataccacaacctacccca |
14757579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 237 - 375
Target Start/End: Complemental strand, 14757520 - 14757382
Alignment:
| Q |
237 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14757520 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
14757421 |
T |
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| Q |
337 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
375 |
Q |
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| T |
14757420 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
14757382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 3613973 - 3613756
Alignment:
| Q |
21 |
gatcattattacggaatgtgtgatccttattgaggtgaaatagcccaaacagaccaataatattcaagcaaatcacgttcatcggctttccggaacacat |
120 |
Q |
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||||||||| || ||||||| |||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||| | |
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| T |
3613973 |
gatcattataacagaatgtgcgatccttattgaggtgaagtagcccaaacagaccgataacattcaagcaaatcacgttcatcggttttccagaacatgt |
3613874 |
T |
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| Q |
121 |
ctccttctcccaagctaaacaagccctaacattctcttgcttcgcaaaagaatcagtccagcaatactctttcatcattcttgaagttggatgaggcata |
220 |
Q |
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||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
3613873 |
ctctttctcccaagctaaacaagccctaacattctcttgatttgcaaaagaatccgtccaacaatactctttcaaggttcttgaagttggatgaggcata |
3613774 |
T |
|
| Q |
221 |
ataccacaacctacccca |
238 |
Q |
| |
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|||||| ||||||||||| |
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| T |
3613773 |
ataccagaacctacccca |
3613756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 237 - 375
Target Start/End: Complemental strand, 3613697 - 3613559
Alignment:
| Q |
237 |
caagttgttgcatactgtattcatttatcttcaaactcacccgatccatatcgacatcgttaagattcctccaagcaacatcagtgacagacatgttatc |
336 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3613697 |
caagttgttgcatactgtattcatttatcttcaaattcaaccgattactagcgacatcgttgagattcctccaagcaacatcagtgacagacatgttatc |
3613598 |
T |
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| Q |
337 |
agcatttaaaatgcccatatcacgtacatcaaagttcat |
375 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
3613597 |
agcattcaaaatgcccatatcacgtacatcaaagttcat |
3613559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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