View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13611_low_15 (Length: 277)
Name: NF13611_low_15
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13611_low_15 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 30147601 - 30147852
Alignment:
| Q |
10 |
catcatcatcacccctaaaaacctccctatactaaaccctctcttatcaactcacccaaacaccatccaaacactcattctccctttcccttcacaccca |
109 |
Q |
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| T |
30147601 |
catcatcatcacccctaaaaatctccctatactaaaccctctcttatcaactcacccaaacaccatccaaacactcattctccctttcccttcacaccca |
30147700 |
T |
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| Q |
110 |
aaaatacctcaagatgcagaaaatatccgtcatgtcggtaacactggaaactatcctttcattaacgccctctccaatctccaaactccaattatccact |
209 |
Q |
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| T |
30147701 |
aaaatacctcaagatgcagaaaatatccgtcatgtcggtaacactggaaactatcctttcattaacgccctttccaatctccaaagtccaattatccact |
30147800 |
T |
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| Q |
210 |
ggtttaacacccaccctaatccccctgttgcactcatctctgatttcttcct |
261 |
Q |
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| T |
30147801 |
ggtttaacacccaccctaatccccctgttgcactcatctctgatttcttcct |
30147852 |
T |
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Target: scaffold0009 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 142006 - 141756
Alignment:
| Q |
11 |
atcatcatcacccctaaaaacctccctatactaaaccctctcttatcaactcacccaaacaccatccaaacactcattctccctttcccttcacacccaa |
110 |
Q |
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|||||| |||| |||||||||||||| || ||| |||||| || ||||| ||||||||||| ||| ||||||| || |||| |||||||||||||| | |
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| T |
142006 |
atcatcgtcactcctaaaaacctccccatcttaacccctcttttgtcaacacacccaaacacaatcaaaacactaatcttcccattcccttcacacccca |
141907 |
T |
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| Q |
111 |
aaatacctcaagatgcagaaaatatccgtcatgtcggtaacactggaaactatcctttcattaacgccctctccaatctccaaactccaattatccactg |
210 |
Q |
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||||||| ||||| |||||| ||||| | |||| ||| | ||||||||||||||||||||||| || |||||||| |||| ||||| ||||| || |
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| T |
141906 |
aaataccctcagatgttgaaaatctccgtgaaatcggaaaccccggaaactatcctttcattaacgcactttccaatcttcaaaacccaataatccagtg |
141807 |
T |
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| Q |
211 |
gtttaacacccaccctaatccccctgttgcactcatctctgatttcttcct |
261 |
Q |
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|||||||| ||||| ||||||||||||||| ||||| || ||||||||||| |
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| T |
141806 |
gtttaacatccaccataatccccctgttgctctcatatccgatttcttcct |
141756 |
T |
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