View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13611_low_16 (Length: 273)

Name: NF13611_low_16
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13611_low_16
NF13611_low_16
[»] chr2 (10 HSPs)
chr2 (1-257)||(8416706-8416977)
chr2 (1-257)||(8376110-8376384)
chr2 (1-218)||(8405541-8405776)
chr2 (1-232)||(8411647-8411896)
chr2 (1-232)||(8433745-8433994)
chr2 (5-218)||(8395800-8396031)
chr2 (1-218)||(8430812-8431047)
chr2 (1-41)||(8368107-8368147)
chr2 (1-41)||(8401263-8401303)
chr2 (1-41)||(8422840-8422880)
[»] scaffold1738 (1 HSPs)
scaffold1738 (60-237)||(1-196)
[»] chr4 (1 HSPs)
chr4 (102-182)||(55330504-55330584)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 8416977 - 8416706
Alignment:
Q  1 caagttggcatggtttttgaaatgtatagagcttctggtggttttttcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagaga 100  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8416977 caagttggcatggtttttgaaatgta--gagcttctggtggttttt-caacttgttagaaacttcaattgaatcaactttgggagagaaagatttagaga 8416881  T
Q  101 aa------------------tttgaaatgaaaatggctttgcaattgggaagaaatgtatcagagctgagggaacgtgccacaaaatcagcttcttgtcg 182  Q
    ||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8416880 aaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaaatgtatcagagctgagggaacgtgccacaaaatcagcttcttgtcg 8416781  T
Q  183 cattgaaggtgttgacatagatgaatttgccagcaagctattctgagataatcttcaatattaacacattatttt 257  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8416780 catcgaaggtgttgacatagatgaattttccagcaagctattctgagataatcttcaatattaacacattatttt 8416706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 8376110 - 8376384
Alignment:
Q  1 caagttggcatggtttttgaaatgtatagagcttctggtggttttttcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  8376110 caagttggcatggtttttgaaatgtatagagcttctggtggtttcttcaacttgatagaaacttcaattgattcaactttgggagagaaagatttagaga 8376209  T
Q  101 aa------------------tttgaaatgaaaatggctttgcaattgggaagaaatgtatcagagctgagggaacgtgccacaaaatcagcttcttgtcg 182  Q
    ||                  |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  8376210 aaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcctcaaaatcagcttcttgtcg 8376309  T
Q  183 cattgaaggtgttgacatagatgaatttgccagcaagctattctgagataatcttcaatattaacacattatttt 257  Q
    ||| |||||| | || || ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  8376310 catggaaggtatcgaaattgatgaatttgccagcaagctattctgagataatcttcaagactaacacattatttt 8376384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 8405776 - 8405541
Alignment:
Q  1 caagttggcatggtttttgaaatgtatagagcttctggtggttttttcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagaga 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8405776 caagttggcatggtttttgaaatgtatagagcttctgctggttttttcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagaga 8405677  T
Q  101 a------------------atttgaaatgaaaatggctttgcaattgggaagaaatgtatcagagctgagggaacgtgccacaaaatcagcttcttgtcg 182  Q
    |                  ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||  ||||||||||||||| |||    
T  8405676 aaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatctgagctgagggaacttgcatcaaaatcagcttcttatcg 8405577  T
Q  183 cattgaaggtgttgacatagatgaatttgccagcaa 218  Q
    ||| |||||||||||||||||||||||||| |||||    
T  8405576 catggaaggtgttgacatagatgaatttgcaagcaa 8405541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8411896 - 8411647
Alignment:
Q  1 caagttggcatggtttttgaaatgtatagagcttctggtggttttttcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagaga 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8411896 caagttggcatggtttttgaaatgtatagagcttctgctggttttttcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagaga 8411797  T
Q  101 a------------------atttgaaatgaaaatggctttgcaattgggaagaaatgtatcagagctgagggaacgtgccacaaaatcagcttcttgtcg 182  Q
    |                  ||||||| ||||||||||||||| ||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||    
T  8411796 aaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctcaaaatcagcttcttgtcg 8411697  T
Q  183 cattgaaggtgttgacatagatgaatttgccagcaagctattctgagata 232  Q
    ||| ||| || | || ||||||||||||||||||||||| ||||||||||    
T  8411696 catggaaagtatcgaaatagatgaatttgccagcaagctcttctgagata 8411647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8433994 - 8433745
Alignment:
Q  1 caagttggcatggtttttgaaatgtatagagcttctggtggttttttcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagaga 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8433994 caagttggcatggtttttgaaatgtatagagcttctgctggttttttcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagaga 8433895  T
Q  101 a------------------atttgaaatgaaaatggctttgcaattgggaagaaatgtatcagagctgagggaacgtgccacaaaatcagcttcttgtcg 182  Q
    |                  ||||||| ||||||||||||||| ||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||    
T  8433894 aaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctcaaaatcagcttcttgtcg 8433795  T
Q  183 cattgaaggtgttgacatagatgaatttgccagcaagctattctgagata 232  Q
    ||| ||| || | || ||||||||||||||||||||||| ||||||||||    
T  8433794 catggaaagtatcgaaatagatgaatttgccagcaagctcttctgagata 8433745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 8395800 - 8396031
Alignment:
Q  5 ttggcatggtttttgaaatgtatagagcttctggtggttttttcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagagaaa-- 102  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||      
T  8395800 ttggcatggtttttgaaatgtatagagcttctgatggtttattcaacttgatagaaacttcaattgaatcaactttgggagagaaagatttagagaaaag 8395899  T
Q  103 ----------------tttgaaatgaaaatggctttgcaattgggaagaaatgtatcagagctgagggaacgtgccacaaaatcagcttcttgtcgcatt 186  Q
                    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||  ||||||||||||||| ||||||     
T  8395900 agaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatcaaaatcagcttcttatcgcatg 8395999  T
Q  187 gaaggtgttgacatagatgaatttgccagcaa 218  Q
    |||||||||||||||||||||||||| |||||    
T  8396000 gaaggtgttgacatagatgaatttgcaagcaa 8396031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 8431047 - 8430812
Alignment:
Q  1 caagttggcatggtttttgaaatgtatagagcttctggtggttttttcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagaga 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8431047 caagttggcatggtttttgaaatgtatagagcttctgctggttttttcaacttgatagaaacttcaattgaatcaactttgggagagaaagatttagaga 8430948  T
Q  101 a------------------atttgaaatgaaaatggctttgcaattgggaagaaatgtatcagagctgagggaacgtgccacaaaatcagcttcttgtcg 182  Q
    |                  |||||||||||| ||||||||||||||||||| || |||||||||||| ||||||| |||  ||||||||||||||| |||    
T  8430947 aaagagaaaatggagagctatttgaaatgaagatggctttgcaattgggaaaaagtgtatcagagctaagggaacttgcatcaaaatcagcttcttatcg 8430848  T
Q  183 cattgaaggtgttgacatagatgaatttgccagcaa 218  Q
    ||| |||||||||||||||||||||||| |||||||    
T  8430847 catggaaggtgttgacatagatgaattttccagcaa 8430812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8368147 - 8368107
Alignment:
Q  1 caagttggcatggtttttgaaatgtatagagcttctggtgg 41  Q
    |||||||| ||||||| ||||||||||||||||| ||||||    
T  8368147 caagttggtatggtttctgaaatgtatagagcttgtggtgg 8368107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8401263 - 8401303
Alignment:
Q  1 caagttggcatggtttttgaaatgtatagagcttctggtgg 41  Q
    |||||||| ||||||| ||||||||||||||||| ||||||    
T  8401263 caagttggtatggtttctgaaatgtatagagcttgtggtgg 8401303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8422840 - 8422880
Alignment:
Q  1 caagttggcatggtttttgaaatgtatagagcttctggtgg 41  Q
    |||||||| ||||||| ||||||||||||||||| ||||||    
T  8422840 caagttggtatggtttctgaaatgtatagagcttgtggtgg 8422880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1738 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 1 - 196
Alignment:
Q  60 aacttcaattgaatcaactttgggagagaaagatttagagaaa------------------tttgaaatgaaaatggctttgcaattgggaagaaatgta 141  Q
    |||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||| ||||    
T  1 aacttcaattgaatcaactttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgta 100  T
Q  142 tcagagctgagggaacgtgccacaaaatcagcttcttgtcgcattgaaggtgttgacatagatgaatttgccagcaagctattctgagataatctt 237  Q
    |||||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  101 tcagagctgagggaacttgcatcaaaatcagcttcttgtcgcatcgaaggtgttgacatagatgaatttgccagcaagttattctgagataatctt 196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 55330584 - 55330504
Alignment:
Q  102 atttgaaatgaaaatggctttgcaattgggaagaaatgtatcagagctgagggaacgtgccacaaaatcagcttcttgtcg 182  Q
    ||||||||||||||||||||||   |||||||||||||| || ||| |||| || | |||  ||||||||| |||||||||    
T  55330584 atttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttgcttcaaaatcaggttcttgtcg 55330504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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