View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13611_low_18 (Length: 249)
Name: NF13611_low_18
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13611_low_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 5174548 - 5174352
Alignment:
| Q |
11 |
attgcattttgatgtatttacatatacatgtgtaaactgtaaagattcttttgtcttttccaacccttccaaactaattaaaaaggcctatataggaaga |
110 |
Q |
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| T |
5174548 |
attgcattttgatgtatttacatatacatgtgtaaactgtaaagattcttttgtcttttccaacccttccaaactaa----aaaggcctgtataggaaga |
5174453 |
T |
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| Q |
111 |
gaaaggggttgaaaatgacaagtatcaaatatgacaaaaactacaactgttactaatacc-tacttagttgttttatggttacatttaaacataaattat |
209 |
Q |
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| T |
5174452 |
gaaaggggttgaaaatgacaagtatcaaatatgacaaaaactacaactgttactaataccttacttagttgttttatggttacattaaaacataaattat |
5174353 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 3684722 - 3684679
Alignment:
| Q |
208 |
atctagaactcaatatatat--gaatttcatactttaatttact |
249 |
Q |
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| T |
3684722 |
atctagaactcaatatataaacgaatttcatactttaatttact |
3684679 |
T |
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