View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13611_low_19 (Length: 243)
Name: NF13611_low_19
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13611_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 93 - 224
Target Start/End: Complemental strand, 49411176 - 49411045
Alignment:
| Q |
93 |
tagacgaatacaaagaagaggaaacgttgttcattgtagccaaccatacaaagcgaaaagcaacatggccaagaaaattagcattcatgttcttaacaac |
192 |
Q |
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| T |
49411176 |
tagacgaatacaaagaagaggaaacgttgttcattgtagccaaccatacaaagcgaaaagcaacatggccaagaaaattagcattcatgttcttaacaac |
49411077 |
T |
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| Q |
193 |
aactcctcttccatttgcttcattatgggaat |
224 |
Q |
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| T |
49411076 |
aactcctcttccatttgcttcattatgggaat |
49411045 |
T |
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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 49411253 - 49411211
Alignment:
| Q |
16 |
atcaaacccaaacctcacaaccactttcttaagtataaatact |
58 |
Q |
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| T |
49411253 |
atcaaacccaaacctcacaaccactttcttaagtataaatact |
49411211 |
T |
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