View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13611_low_2 (Length: 693)

Name: NF13611_low_2
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13611_low_2
NF13611_low_2
[»] chr1 (9 HSPs)
chr1 (18-684)||(10604631-10605308)
chr1 (483-531)||(30762018-30762066)
chr1 (466-528)||(10785093-10785155)
chr1 (466-531)||(4431062-4431127)
chr1 (466-531)||(49820543-49820608)
chr1 (469-528)||(27905821-27905880)
chr1 (481-528)||(34159045-34159092)
chr1 (466-531)||(7451890-7451955)
chr1 (490-531)||(32882774-32882815)
[»] chr4 (5 HSPs)
chr4 (466-528)||(42719543-42719605)
chr4 (469-530)||(19814847-19814908)
chr4 (465-535)||(21983500-21983569)
chr4 (466-535)||(28967262-28967330)
chr4 (474-531)||(52009220-52009277)
[»] chr3 (5 HSPs)
chr3 (42-123)||(32604288-32604369)
chr3 (617-689)||(32604646-32604718)
chr3 (480-528)||(46358014-46358062)
chr3 (466-528)||(32010174-32010236)
chr3 (466-528)||(50518721-50518783)
[»] chr6 (4 HSPs)
chr6 (474-528)||(3880244-3880298)
chr6 (466-531)||(13423749-13423814)
chr6 (483-531)||(4043346-4043394)
chr6 (466-534)||(16180483-16180550)
[»] chr8 (5 HSPs)
chr8 (466-527)||(12197708-12197769)
chr8 (466-527)||(12442136-12442197)
chr8 (488-531)||(2613176-2613219)
chr8 (471-535)||(8843739-8843802)
chr8 (475-531)||(17656365-17656421)
[»] chr7 (5 HSPs)
chr7 (470-535)||(3478739-3478804)
chr7 (466-527)||(33719352-33719413)
chr7 (466-528)||(6726051-6726113)
chr7 (466-535)||(42532884-42532953)
chr7 (466-535)||(47456699-47456767)
[»] chr5 (3 HSPs)
chr5 (466-531)||(8297857-8297922)
chr5 (475-535)||(25992397-25992457)
chr5 (466-531)||(23426687-23426752)
[»] chr2 (5 HSPs)
chr2 (466-535)||(15361111-15361179)
chr2 (474-528)||(4975140-4975194)
chr2 (474-528)||(4993048-4993102)
chr2 (466-506)||(13337637-13337677)
chr2 (466-530)||(40470777-40470840)
[»] scaffold0063 (1 HSPs)
scaffold0063 (466-510)||(58515-58559)
[»] scaffold0002 (1 HSPs)
scaffold0002 (491-531)||(426557-426597)


Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 18 - 684
Target Start/End: Original strand, 10604631 - 10605308
Alignment:
Q  18 ataattaaatggaggagaggaattgaagagccttactcaaggaaaccaagaaccgctagcctcaaaaagatagggagtgtcatctttggcctaatttttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10604631 ataattaaatggaggagaggaattgaagagccttactcaaggaaaccaagaaccgctagcctcaaaaagatagggagtgtcatctttggcctaatttttc 10604730  T
Q  118 tgtaaaagaagatgcaacaaaacataataagttgatgatcaataaacattaaattaaaatattatagctagcatagaaaaagaatgatagaaaaggtgta 217  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10604731 tgtaaaagaagatgcaacaaaacagtataagttgatgatcaataaacattaaattaaaatattatagctagcatagaaaaagaatgatagaaaagatgta 10604830  T
Q  218 cttttgtttcatattttatagcatgattaatttagacaaataagtttcttttaaaataatta--ttgtccaaataatggtttttcacatgcaaaactata 315  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  10604831 cttttgtttgatattttatagcatgattaatttagacaaataagtttcttttaaaataattattttgtccaaataatggtttttcacatgcaaaactata 10604930  T
Q  316 tattataaaacatgtgttattagttgtgtagtgaagggtttggcctccaccaactagagtctcaacatttcattggtgttttgacttactaaccctagcg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||  |    
T  10604931 tattataaaacatgtgttattagttgtgtagtgaagggtttggcctcaaccaactagagtctcaacatgtcattggtgttttgacttactaaccctaatg 10605030  T
Q  416 aagtctcaacatgttattggtgtct-nnnnnnnntatagtgatgaggtagatattctctgtttcactggtctctattcgtcttgagcatggatctgattg 514  Q
    |||||||||||||||||||||||||         ||||||||||||||| ||||||||||||||||  |||||||||||||||||||| |||||||||||    
T  10605031 aagtctcaacatgttattggtgtctaaaaaaaaatatagtgatgaggtatatattctctgtttcaccagtctctattcgtcttgagcagggatctgattg 10605130  T
Q  515 ttaaataaaatttgctgattc--------nnnnnnnnntgatgaggtagataagaataataaggacctttcaaggacaagggcaaaaggggccatgaaga 606  Q
    |||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10605131 ttaaataaaatttgctgattcaaaaaaaaaaagtatagtgatgaggtagataagaataataaggacctttcaaggacaagggcaaaaggggccatgaaga 10605230  T
Q  607 tagtagcaataacatgacggtacacagagagtacccaatgactcatgccatgcttgaatgaaaccatagtgatgatgt 684  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10605231 tagtagcaataacatgacggtacacagagagtacccaatgactcatgccatgcttgaatgaaaccatagtgatgatgt 10605308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 531
Target Start/End: Complemental strand, 30762066 - 30762018
Alignment:
Q  483 gtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 531  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  30762066 gtctctgttcgtcttgagcaaggatctgatttttaaataaaatttgctg 30762018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 466 - 528
Target Start/End: Complemental strand, 10785155 - 10785093
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 528  Q
    ||||||| |||| ||  |||||||||||||||||||| ||||||| ||||||||| |||||||    
T  10785155 tattctcagttttacccgtctctattcgtcttgagcagggatctggttgttaaatgaaatttg 10785093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 4431062 - 4431127
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 531  Q
    |||||||  |||||| |||||||||||||||||||||  ||| || ||||| ||||||||||||||    
T  4431062 tattctcaatttcaccggtctctattcgtcttgagcagagatatgtttgtttaataaaatttgctg 4431127  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 49820543 - 49820608
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 531  Q
    ||||||||| ||||| | |||||||  ||||||||||  |||| ||||||||||||||||||||||    
T  49820543 tattctctgattcaccgatctctatctgtcttgagcagagatcagattgttaaataaaatttgctg 49820608  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 528
Target Start/End: Original strand, 27905821 - 27905880
Alignment:
Q  469 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 528  Q
    |||||| ||||| ||||||||||| ||||||||| ||||||| ||||| |||||| ||||    
T  27905821 tctctgattcaccggtctctattcttcttgagcagggatctggttgtttaataaattttg 27905880  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 528
Target Start/End: Original strand, 34159045 - 34159092
Alignment:
Q  481 tggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 528  Q
    ||||||||||| |||||||||| ||||||||||||| |||||| ||||    
T  34159045 tggtctctatttgtcttgagcagggatctgattgtttaataaattttg 34159092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 531
Target Start/End: Complemental strand, 7451955 - 7451890
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 531  Q
    ||||||| ||||||| ||||||| |||||||||||||  |||||  ||||| ||||| ||||||||    
T  7451955 tattctcagtttcaccggtctctgttcgtcttgagcagagatctagttgtttaataatatttgctg 7451890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 531
Target Start/End: Original strand, 32882774 - 32882815
Alignment:
Q  490 ttcgtcttgagcatggatctgattgttaaataaaatttgctg 531  Q
    ||||||||||||| |||| |||||||| ||||||||||||||    
T  32882774 ttcgtcttgagcagggatgtgattgtttaataaaatttgctg 32882815  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 466 - 528
Target Start/End: Original strand, 42719543 - 42719605
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 528  Q
    ||||||| ||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||    
T  42719543 tattctcagtttcaccggtctctattcgtcttgagcagggatttgattgtttaataaaatttg 42719605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 469 - 530
Target Start/End: Complemental strand, 19814908 - 19814847
Alignment:
Q  469 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgct 530  Q
    ||||||||| |  ||||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  19814908 tctctgttttatcggtctctgttcgtcttgagcagggatctggttgttaaataaaatttgct 19814847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 465 - 535
Target Start/End: Complemental strand, 21983569 - 21983500
Alignment:
Q  465 atattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 535  Q
    ||||| ||| |||||  ||||||| ||||||||||||| |||||||||| || ||||||||||||||||||    
T  21983569 atattttctatttcatcggtctctgttcgtcttgagcagggatctgatt-tttaataaaatttgctgattc 21983500  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 28967262 - 28967330
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 535  Q
    |||| |||||||||| | ||||| |||||||||||||   ||||| || |||||||||||||||||||||    
T  28967262 tattatctgtttcaccgatctctgttcgtcttgagcagaaatctggtt-ttaaataaaatttgctgattc 28967330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 52009220 - 52009277
Alignment:
Q  474 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 531  Q
    ||||||| | ||||||||||||||| ||| ||||||| | ||| ||||||||||||||    
T  52009220 gtttcaccgatctctattcgtcttgggcagggatctggtagtttaataaaatttgctg 52009277  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 32604288 - 32604369
Alignment:
Q  42 gaagagccttactcaaggaaaccaagaaccgctagcctcaaaaagatagggagtgtcatctttggcctaatttttctgtaaa 123  Q
    ||||||||||||||||||||||||||  || ||| |||||  ||||| ||||| ||||||||||||||  ||||||||||||    
T  32604288 gaagagccttactcaaggaaaccaagtgccactatcctcaggaagatggggagagtcatctttggccttgtttttctgtaaa 32604369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 689
Target Start/End: Original strand, 32604646 - 32604718
Alignment:
Q  617 aacatgacggtacacagagagtacccaatgactcatgccatgcttgaatgaaaccatagtgatgatgtccatc 689  Q
    ||||||||||||||| ||||| | |||||| ||||| ||||| ||||| ||||||||||| ||||||| ||||    
T  32604646 aacatgacggtacacggagagaatccaatggctcataccatgtttgaaagaaaccatagtaatgatgtacatc 32604718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 528
Target Start/End: Complemental strand, 46358062 - 46358014
Alignment:
Q  480 ctggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 528  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  46358062 ctggtctctgttcgtcttgagcagggatctggttgttaaataaaatttg 46358014  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 528
Target Start/End: Original strand, 32010174 - 32010236
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 528  Q
    |||||||||  |||| | ||||| ||||||||||| | ||||||| |||||||||||||||||    
T  32010174 tattctctgaatcaccgatctctgttcgtcttgagtagggatctggttgttaaataaaatttg 32010236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 528
Target Start/End: Complemental strand, 50518783 - 50518721
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 528  Q
    ||||||| |||||||  |||||| ||||||||||||| |||||  |||||| |||||||||||    
T  50518783 tattctcagtttcaccagtctctgttcgtcttgagcagggatcaaattgtttaataaaatttg 50518721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 528
Target Start/End: Complemental strand, 3880298 - 3880244
Alignment:
Q  474 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 528  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||| |||||||||||    
T  3880298 gtttcaccggtctctgttcgtcttgagcagggatctgattgtttaataaaatttg 3880244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 13423749 - 13423814
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 531  Q
    ||||||| ||||||  ||||||| ||||||||||| | ||| || || ||||||||||||||||||    
T  13423749 tattctcagtttcaaaggtctctgttcgtcttgaggagggacctaatggttaaataaaatttgctg 13423814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 483 - 531
Target Start/End: Complemental strand, 4043394 - 4043346
Alignment:
Q  483 gtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 531  Q
    |||| |||||||||||||||  ||| ||||| |||||||||||||||||    
T  4043394 gtctttattcgtcttgagcagagatttgatttttaaataaaatttgctg 4043346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 534
Target Start/End: Complemental strand, 16180550 - 16180483
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgatt 534  Q
    |||| |||||||||| | ||| | |||||||||||||  ||||||||| || |||||||||||||||||    
T  16180550 tattatctgtttcaccgatctttgttcgtcttgagcagagatctgatt-tttaataaaatttgctgatt 16180483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 527
Target Start/End: Complemental strand, 12197769 - 12197708
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaattt 527  Q
    ||||||||| ||||| | |||||||||||||||||||| |||||  ||||||||||||||||    
T  12197769 tattctctgattcaccgatctctattcgtcttgagcatagatctcgttgttaaataaaattt 12197708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 527
Target Start/End: Complemental strand, 12442197 - 12442136
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaattt 527  Q
    ||||||||| ||||| | |||||||||||||||||||| |||||  ||||||||||||||||    
T  12442197 tattctctgattcaccgatctctattcgtcttgagcatagatctcgttgttaaataaaattt 12442136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 488 - 531
Target Start/End: Complemental strand, 2613219 - 2613176
Alignment:
Q  488 tattcgtcttgagcatggatctgattgttaaataaaatttgctg 531  Q
    ||||||||||||| | ||||||||||||||||||||||||||||    
T  2613219 tattcgtcttgagtagggatctgattgttaaataaaatttgctg 2613176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 535
Target Start/End: Complemental strand, 8843802 - 8843739
Alignment:
Q  471 tctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 535  Q
    |||||||||| ||||||| ||||||||||| | |||| ||||| || ||||||||||||||||||    
T  8843802 tctgtttcaccggtctctgttcgtcttgagaagggatttgatt-tttaataaaatttgctgattc 8843739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 475 - 531
Target Start/End: Complemental strand, 17656421 - 17656365
Alignment:
Q  475 tttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 531  Q
    |||||| ||||||||||  || |||||| ||| ||||||||| ||||||||||||||    
T  17656421 tttcaccggtctctattgctcatgagcagggacctgattgtttaataaaatttgctg 17656365  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 535
Target Start/End: Original strand, 3478739 - 3478804
Alignment:
Q  470 ctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 535  Q
    |||| |||||| ||||||| || ||||||| || ||||||| ||||||||||||||||||||||||    
T  3478739 ctctctttcaccggtctctgtttgtcttgatcagggatctggttgttaaataaaatttgctgattc 3478804  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 527
Target Start/End: Original strand, 33719352 - 33719413
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaattt 527  Q
    ||||||| ||||||| | ||||| ||||||||||||| ||||||| ||||| ||||||||||    
T  33719352 tattctcagtttcaccgatctctgttcgtcttgagcagggatctggttgtttaataaaattt 33719413  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 528
Target Start/End: Complemental strand, 6726113 - 6726051
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 528  Q
    ||||||| ||||||| | ||||| |||||||||||||  |||||| ||||| |||||||||||    
T  6726113 tattctcagtttcaccgatctctgttcgtcttgagcagagatctggttgtttaataaaatttg 6726051  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 42532953 - 42532884
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 535  Q
    ||||||| ||| ||| ||||||| ||||||||||||| |||| || ||||  |||||||||| |||||||    
T  42532953 tattctcagttccaccggtctctgttcgtcttgagcagggatttggttgtctaataaaatttactgattc 42532884  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 47456767 - 47456699
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 535  Q
    |||| |||||||||| ||||||| |||||||||||||  |||||| || || ||||||||||| ||||||    
T  47456767 tattttctgtttcaccggtctctgttcgtcttgagcagagatctggtt-tttaataaaatttgttgattc 47456699  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 8297857 - 8297922
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 531  Q
    ||||||| ||||||| ||||||| ||||||||||| |  |||||||||||| ||||||||||||||    
T  8297857 tattctcagtttcaccggtctctgttcgtcttgagtagagatctgattgttcaataaaatttgctg 8297922  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 535
Target Start/End: Original strand, 25992397 - 25992457
Alignment:
Q  475 tttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 535  Q
    |||||| ||||||| |||||||||||||  |||||| ||||| ||||| ||||||||||||    
T  25992397 tttcaccggtctctgttcgtcttgagcagagatctggttgtttaataatatttgctgattc 25992457  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 23426687 - 23426752
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 531  Q
    |||||||||  |||| ||||||| ||| |||||||||   |||||||| |||||||||||||||||    
T  23426687 tattctctgaatcaccggtctctgttcctcttgagcagcaatctgatttttaaataaaatttgctg 23426752  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 15361111 - 15361179
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 535  Q
    |||| ||||||||||  |||||||||||||||||||| |||| ||||| || ||||||||||| ||||||    
T  15361111 tattatctgtttcaccagtctctattcgtcttgagcagggatttgatt-tttaataaaatttgttgattc 15361179  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 528
Target Start/End: Original strand, 4975140 - 4975194
Alignment:
Q  474 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 528  Q
    |||||||| |||||| |||||||||||||  || ||||| |||||||||||||||    
T  4975140 gtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaaatttg 4975194  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 528
Target Start/End: Original strand, 4993048 - 4993102
Alignment:
Q  474 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 528  Q
    |||||||| |||||| |||||||||||||  || ||||| |||||||||||||||    
T  4993048 gtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaaatttg 4993102  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 506
Target Start/End: Original strand, 13337637 - 13337677
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatgga 506  Q
    ||||||||||||||| ||||||| ||||||||||| |||||    
T  13337637 tattctctgtttcaccggtctctgttcgtcttgagtatgga 13337677  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 530
Target Start/End: Original strand, 40470777 - 40470840
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgct 530  Q
    |||||||||||  |||| ||||| ||||||||||||| | |||||||| || |||||||||||||    
T  40470777 tattctctgttaaactgatctctgttcgtcttgagcaagaatctgatt-tttaataaaatttgct 40470840  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 510
Target Start/End: Original strand, 58515 - 58559
Alignment:
Q  466 tattctctgtttcactggtctctattcgtcttgagcatggatctg 510  Q
    |||| |||||||||| ||||||| ||||||||||||| |||||||    
T  58515 tattatctgtttcaccggtctcttttcgtcttgagcagggatctg 58559  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 491 - 531
Target Start/End: Complemental strand, 426597 - 426557
Alignment:
Q  491 tcgtcttgagcatggatctgattgttaaataaaatttgctg 531  Q
    |||||||||| | |||||||||| |||||||||||||||||    
T  426597 tcgtcttgagtagggatctgatttttaaataaaatttgctg 426557  T

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