View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13611_low_23 (Length: 220)
Name: NF13611_low_23
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13611_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 3684813 - 3684644
Alignment:
| Q |
32 |
aaagaacccaataatttcctttgtatacctatcaagaagacaaaggtaacattacctacatttcatgtctttatttttccatttaaaataaaaaatctag |
131 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3684813 |
aaagaacccagtaatttcctttgtatacctatcaaga---caaaggtaacattacctacatttcatgtccttatttttccatttaaaataaaaaatctag |
3684717 |
T |
|
| Q |
132 |
aactcaa--tataaatgaatttcatactttaatttacttcaaacactttcatttgttaatggagtgtatcaac |
202 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3684716 |
aactcaatatataaacgaatttcatactttaatttacttcaaacactttcatttgttaatggagtgtatcaac |
3684644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University