View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13611_low_3 (Length: 596)
Name: NF13611_low_3
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13611_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 171 - 578
Target Start/End: Original strand, 5864269 - 5864680
Alignment:
| Q |
171 |
gaaacaattaaatgatatgtttcgtatgaaattatcttttctaaaatgcaaagtctacgaataactctttgattctaatactaattgttaatttattggt |
270 |
Q |
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| T |
5864269 |
gaaacaattaaatgatatgtttcgtatggaattatcttttctaaaatgcaaagtcaacgaataactctttgattctaatactaattgttaatttattggt |
5864368 |
T |
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| Q |
271 |
ttagagagcaaatgtatcaaaactcttcaatttatgaatgtacatgctctcaatgttcgtaatttatgttagtttctagggtttgaattcttacatcctt |
370 |
Q |
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| T |
5864369 |
ttagagagcaaatgtatcaaaactcttcaatttatgaatgtacatgctctcaatgttcgtaatttatgttagtttctagggtttgaattcttacatcctt |
5864468 |
T |
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| Q |
371 |
gttattatgctctccgtga---tcctcaacccaccaaccgagctacgatctataagaaat-nnnnnnnnnttgaatataatgtgatagttccataattaa |
466 |
Q |
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| T |
5864469 |
gttattattctctccgtgatcctcctcaactcaccaactgagctacgatctacaagaaataaaaaacaaattgaaaataatgtgatagttccataattaa |
5864568 |
T |
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| Q |
467 |
tattgattgtagaaaatgaaaacagaaccatttattcaaagactaattcttgatattttctcaatattgttcatagacctttttctttgttactaaatgt |
566 |
Q |
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| T |
5864569 |
tattgattgtagaaaatgaaaacagaaccatttattcaaaggctaattcttgatattttctcaatattgttcatagacctttttctttgttactaaatgt |
5864668 |
T |
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| Q |
567 |
tcatggacttat |
578 |
Q |
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| T |
5864669 |
tcatggacttat |
5864680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 5857275 - 5857448
Alignment:
| Q |
1 |
tgttctactatttcattgaatcagagaagaatccaaaggatgatcctctcatactttggctaactggtggacctggttgctctgctttgtctggtcttat |
100 |
Q |
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| T |
5857275 |
tgttctactatttcattgaatcagagaagaatccaaaggatgatcctctcatactttggctaactggtggacctggttgctctgctttgtctggtcttat |
5857374 |
T |
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| Q |
101 |
gcttgaaattggtaattgcaactttgctttccaaaattttcacttttggataatcttacaatatgcatttgaaa |
174 |
Q |
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| T |
5857375 |
gcttgaaattggtaattccaactttgctttccaaatttttcacttttggataatcttacaataagcatttgaaa |
5857448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 6 - 174
Target Start/End: Original strand, 5864077 - 5864244
Alignment:
| Q |
6 |
tactatttcattgaatcagagaagaatccaaaggatgatcctctcatactttggctaactggtggacctggttgctctgctttgtctggtcttatgcttg |
105 |
Q |
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| T |
5864077 |
tactacttcattgaatcagagaagaatccaaaggatgatcctctcatactttggctaactggtggacctggttgctctgctttgtctggtcttatgcttg |
5864176 |
T |
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| Q |
106 |
aaattggtaattgcaactttgctttccaaaattttcacttttggataatcttacaatatgcatttgaaa |
174 |
Q |
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| T |
5864177 |
aaattggtaattccaac-ttcttttccaaattgttcacttttagatagttttacaataagtatttgaaa |
5864244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 5877076 - 5877194
Alignment:
| Q |
6 |
tactatttcattgaatcagagaagaatccaaaggatgatcctctcatactttggctaactggtggacctggttgctctgctttgtctggtcttatgcttg |
105 |
Q |
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| T |
5877076 |
tactacttcattgaatcagagaggaatccaaaggaggatcctctcttgctttggctaactggtggacctggttgctctgctttgtctggccttgtgtatg |
5877175 |
T |
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| Q |
106 |
aaattggtaattgcaactt |
124 |
Q |
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| T |
5877176 |
aaataggtaattacaactt |
5877194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 25806669 - 25806571
Alignment:
| Q |
27 |
aagaatccaaaggatgatcctctcatactttggctaactggtggacctggttgctctgctttgtctggtcttatgcttgaaattggtaattgcaacttt |
125 |
Q |
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| T |
25806669 |
aagaattcaaaggatgatcctctcatattttggctaactggtacacttgttgtctctgctttgtttgatctaatgcttgaaattggtaattgcaacttt |
25806571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 543
Target Start/End: Original strand, 5858089 - 5858122
Alignment:
| Q |
510 |
taattcttgatattttctcaatattgttcataga |
543 |
Q |
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| T |
5858089 |
taattcttgatattttctcaatattgttcataga |
5858122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 46185329 - 46185236
Alignment:
| Q |
1 |
tgttctactatttcattgaatcagagaagaatccaaaggatgatcctctcatactttggctaactggtggacctggttgctctgctttgtctgg |
94 |
Q |
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| T |
46185329 |
tgttctactattttttagagtctgagaataatcctaaacaagatcctctcttgctttggttaactggtggtcctggttgctctgctttttctgg |
46185236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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