View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13611_low_7 (Length: 435)
Name: NF13611_low_7
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13611_low_7 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Complemental strand, 18153238 - 18152824
Alignment:
| Q |
15 |
atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18153238 |
atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa |
18153139 |
T |
|
| Q |
115 |
gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18153138 |
gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa |
18153039 |
T |
|
| Q |
215 |
atacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatggaggttt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18153038 |
atacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatggaggttt |
18152939 |
T |
|
| Q |
315 |
gggcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18152938 |
gggcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgat |
18152839 |
T |
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| Q |
415 |
tattggaggaacaat |
429 |
Q |
| |
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||||||||||||||| |
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| T |
18152838 |
tattggaggaacaat |
18152824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 208 - 418
Target Start/End: Original strand, 1785691 - 1785901
Alignment:
| Q |
208 |
tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatg |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1785691 |
tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatg |
1785790 |
T |
|
| Q |
308 |
gaggtttgggcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaa |
407 |
Q |
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|||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1785791 |
gaggtttgggcgctcgagggattcaatgttgctaatattttacaagagatgttgacttataaatctgatcatattaaagctcgtcaagaagtactcggaa |
1785890 |
T |
|
| Q |
408 |
ctacgattatt |
418 |
Q |
| |
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||||||||||| |
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| T |
1785891 |
ctacgattatt |
1785901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 194 - 429
Target Start/End: Complemental strand, 23937344 - 23937107
Alignment:
| Q |
194 |
attcatcaagttgatgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaac |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23937344 |
attcatcaagttgatgataaaatacatggacgtttcagtggacattatgcacttgttacacaacaaccccttaaaggaagggtgaaacaaggaggacaac |
23937245 |
T |
|
| Q |
294 |
gggtaggcgaaatggaggtttgggcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcata--ttaaagctcgt |
391 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| |
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| T |
23937244 |
tggtaggcaaaatggaggtttgggcgctcgaggggtttggtgttgctcatattttacaagagatgttgacttataaatctgatcatattttaaagtgcgt |
23937145 |
T |
|
| Q |
392 |
caagaagtactcggaactacgattattggaggaacaat |
429 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
23937144 |
caagaagtactcagaactacgattattggaggaacaat |
23937107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 23 - 402
Target Start/End: Original strand, 222478 - 222857
Alignment:
| Q |
23 |
gaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaa |
122 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||| ||| ||| |
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| T |
222478 |
gaggcttcaagaaaacttgtgttttcagaattatatgaagccagtaaagaaacaaaaaatccatgggtatttgaacccgagtacccgggaaaaagcagaa |
222577 |
T |
|
| Q |
123 |
tatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaaatacatgg |
222 |
Q |
| |
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||||||||||||||||||| | | ||||| || |||||| ||||||| ||| | ||||| || ||||||||||||||||||||||| ||||| ||||| |
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| T |
222578 |
tatttgatggaagaacaggcgacccctttgagcaacctgttctaatagggaagtcctatatcttaaaattaattcatcaagttgatgagaaaattcatgg |
222677 |
T |
|
| Q |
223 |
acgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatggaggtttgggcgctc |
322 |
Q |
| |
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||||| | ||| | || ||||||||||||||||||| ||| |||||| || || ||||| |||||||| ||||| |||||||| |||||||| | |
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| T |
222678 |
gcgttctactgggccctactcacttgttacacaacaaccggttagaggaagagccaagcaagggggacaacgagtaggagaaatggaagtttgggcttta |
222777 |
T |
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| Q |
323 |
gaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtact |
402 |
Q |
| |
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|| || || |||||||||||||||||||||||||| || |||||||||||||| ||| ||| |||||| |||||| |||| |
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| T |
222778 |
gaaggatttggtgttgctcatattttacaagagatacttacttataaatctgaccatcttatagctcgccaagaaatact |
222857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 317 - 429
Target Start/End: Complemental strand, 18638087 - 18637975
Alignment:
| Q |
317 |
gcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgatta |
416 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
18638087 |
gcgcttgaggggttcgatgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagcttttcaagaagtactcaaaactacgatta |
18637988 |
T |
|
| Q |
417 |
ttggaggaacaat |
429 |
Q |
| |
|
||||||||||||| |
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|
| T |
18637987 |
ttggaggaacaat |
18637975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 317 - 429
Target Start/End: Original strand, 18604928 - 18605040
Alignment:
| Q |
317 |
gcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgatta |
416 |
Q |
| |
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||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | |
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| T |
18604928 |
gcgcttgaggggttcgatgttgcttttattttacaagagatgctgacttataaatctgatcatattaaagcttttcaagaagtactcaaaactacgatca |
18605027 |
T |
|
| Q |
417 |
ttggaggaacaat |
429 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18605028 |
ttggaggaacaat |
18605040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 47586031 - 47586066
Alignment:
| Q |
130 |
tggaagaacagggaatctttttgaacagcctgttat |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
47586031 |
tggaagaacagggaatctttttgaacagcctgttat |
47586066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 317 - 429
Target Start/End: Original strand, 38578275 - 38578387
Alignment:
| Q |
317 |
gcgctcgaggggttcggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgatta |
416 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
38578275 |
gcgcttgaggggttcgatgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagcttttcaagaagtactcaaaactacgatta |
38578374 |
T |
|
| Q |
417 |
ttggaggaacaat |
429 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
38578375 |
ttagaggaacaat |
38578387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 22998273 - 22998200
Alignment:
| Q |
62 |
gccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaatatttgatggaag |
135 |
Q |
| |
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|||| |||| ||||||| |||||||| |||||| | || ||||||||||||| |||| ||||||| ||||||| |
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| T |
22998273 |
gccaataaagaaacatccaatccatgaatatttcagcctaagtatccgggaaaaagcgaaatattttatggaag |
22998200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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