View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13611_low_8 (Length: 424)
Name: NF13611_low_8
Description: NF13611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13611_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 47735346 - 47734952
Alignment:
| Q |
18 |
cagacggggtcgaatccaacaaaattgttccagcagaattctttccagacactttgctgcaaggtgtattatcaacttcttttcccttgtcattgttatt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47735346 |
cagacggggtcgaatccaacaaaattgttccagcagaattctttctagacactttgctgcaaggtgtattatcaacttcttttcccttgtcattgttatt |
47735247 |
T |
|
| Q |
118 |
agccacagaatccataacatccataagattaaccacggtattggatgaaccagcacaaacgttatcttgattctgtaataaaaaatgacattaacataag |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47735246 |
agccacagaatccatagcatccataagattaaccacggtattggatgaaccagcacaaacgttatctagattctgtaataaaaaatgacattaacataag |
47735147 |
T |
|
| Q |
218 |
gaaatttatatttaatcagatcacgtgccgcatggaatatcaaataaactttatggaaagaatttatgtcacacctcatctagcgtctcatatgctacat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47735146 |
gaaatttatatttaatcagatcacgtgccgcatggaatatcaaataaactttatggaaagaatttatgtcacacctcatctagcgtctcatatgctacat |
47735047 |
T |
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| Q |
318 |
cttcattatcagaaagctgaaggtgcaaacaaaaactataagaaagaaaccattcaactcacaaataatcaatgggggatgttgttgattaatat |
412 |
Q |
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| T |
47735046 |
cttcattatcagaaagctgaaggtgcagacaaaaactataagaaagaaaccattcaactcacaaataatcaatgggggatgttgttgattaatat |
47734952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 18004297 - 18003903
Alignment:
| Q |
18 |
cagacggggtcgaatccaacaaaattgttccagcagaattctttccagacactttgctgcaaggtgtattatcaacttcttttcccttgtcattgttatt |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||| |
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| T |
18004297 |
cagacggggtcgaatccaacaaaattgttccagtagaattctttccagacactttgatgcaaggtgtagtatcaaattctttctccttgtcattgttatt |
18004198 |
T |
|
| Q |
118 |
agccacagaatccataacatccataagattaaccacggtattggatgaaccagcacaaacgttatcttgattctgtaataaaaaatgacattaacataag |
217 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
18004197 |
agccacagaatccatagcatccataagattaaccacggtattggatgaaccagcacaaacgttatctagattctgtaataaaaaatgatattaacataag |
18004098 |
T |
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| Q |
218 |
gaaatttatatttaatcagatcacgtgccgcatggaatatcaaataaactttatggaaagaatttatgtcacacctcatctagcgtctcatatgctacat |
317 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
18004097 |
gaaatttatatttaatcagatcacgtgtcgcatggaatatcaaataaactttatggaaagaatttatttcacacctcatctagcgtctcatttgctacat |
18003998 |
T |
|
| Q |
318 |
cttcattatcagaaagctgaaggtgcaaacaaaaactataagaaagaaaccattcaactcacaaataatcaatgggggatgttgttgattaatat |
412 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
18003997 |
cttcattatcagaaatctgaaggtgcaaacaaaaactataagaaagaaatcattcaactcacaaataattaacgggggatgttgttgattaatat |
18003903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 16804056 - 16803663
Alignment:
| Q |
18 |
cagacggggtcgaatccaacaaaattgttccagcagaattctttccagacactttgctgcaaggtgtattatcaacttcttttcccttgtcattgttatt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
16804056 |
cagacggggtcgaatccaacaaaattgttccagcaaaattctttccagacactttgctgcaaggtgtagtatcaacttctttatccttgtcattgttatt |
16803957 |
T |
|
| Q |
118 |
agccacagaatccataacatccataagattaaccacggtattggatgaaccagcacaaacgttatcttgattctgtaataaaaaatgacattaacataag |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||||||| ||||||||||| |
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| T |
16803956 |
agccacagaatccatagcatccataagattaaccacggtattggacgaaccagcacaaacgttatcta-attttgtgataaaaaatgatattaacataag |
16803858 |
T |
|
| Q |
218 |
gaaatttatatttaatcagatcacgtgccgcatggaatatcaaataaactttatggaaagaatttatgtcacacctcatctagcgtctcatatgctacat |
317 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||| |
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| T |
16803857 |
gaaatttatatttaatcagatcacgtgtcgcatggaatatcaaataaactttatggaaagaatttatttcacaccccatctagcgtctcatttgctacat |
16803758 |
T |
|
| Q |
318 |
cttcattatcagaaagctgaaggtgcaaacaaaaactataagaaagaaaccattcaactcacaaataatcaatgggggatgttgttgattaatat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
16803757 |
cttcattatcagaaagctgaaggtgcaaacaaaaactataagaaagaaatcattcaactcacaaataattaacgggggatgttgttgattaatat |
16803663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 16804158 - 16804122
Alignment:
| Q |
18 |
cagacggggtcgaatccaacaaaattgttccagcaga |
54 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
16804158 |
cagacggggtcgaatccaacaaacctgttccagcaga |
16804122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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