View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13612_high_12 (Length: 375)
Name: NF13612_high_12
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 23 - 366
Target Start/End: Original strand, 41146691 - 41147034
Alignment:
| Q |
23 |
cgggaaacttccaggagtttcctatgtcccttccaaagataaggtttgaccgtaaggaagttttagctcagaccatactccaaccagcttttttccccat |
122 |
Q |
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| T |
41146691 |
cgggaaacttccaggagtttcctatgtcccttccaaagataaggtttgaccgttaggaagttttagctcagaccatactccaaccagcttttttccccat |
41146790 |
T |
|
| Q |
123 |
cgaacacctatctttcatcgtccttctcacattttctgcttcatcccatctcccaatagagctatacatattggctaccattatatagtatccatcattt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41146791 |
cgaacacctatctttcatcgtccttctcacattttctgcttcatcccatctcccaatagagctatacatattggctaccattatatagtatccatcattt |
41146890 |
T |
|
| Q |
223 |
tccggttcagagtcaatagcattcttgccaattcttattcccatttcaatttgattgtgagttttacaagcacttaacagtgctccccacacgccaccat |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41146891 |
tccggttcagagtcaatagcattcttgccaattcttattcccatttcaatttgattgtgagttttacaagcacttaacagtgctccccacacgccaccat |
41146990 |
T |
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| Q |
323 |
caggaggaatgggcatggataagactaattcttctgcttcttct |
366 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41146991 |
caggaggaatgggcatggataagaccaattcttctgcttcttct |
41147034 |
T |
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