View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13612_high_16 (Length: 320)

Name: NF13612_high_16
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13612_high_16
NF13612_high_16
[»] chr4 (1 HSPs)
chr4 (10-302)||(52987880-52988172)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 52988172 - 52987880
Alignment:
Q  10 agatgaaatatctattgacatcataaccgagcacgttgaattagcctcgatgcatggttgttcaagtctggcagagaaagaaaaagattcttgtacagac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  52988172 agatgaaatatctattgacatcataaccgagcacgttgaattagcctcgatgcatggttgttcaaatctggcagagaaagaaaaagattcttgtaaagac 52988073  T
Q  110 tgccccaaattgcctgttgtgtgtggtggctgtgagggtccaaatgagagggaagttagtccatgttgcaagaatgagggctattcaaaggaatcgatcg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  52988072 tgccccaaattgcctgttgtgtgtggtggctgtgagggtccaaatgagagggaagttagtccatgttgcaagaatgagggctattcaaaggaatcgatag 52987973  T
Q  210 aatcgtcaattatgcatgcttgcattagttttgacaagagagaagttggtggatgttgcaagagctacatgaaggaatgctgtggcaggcatg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52987972 aatcgtcaattatgcatgcttgcattagttttgacaagagagaagttggtggatgttgcaagagctacatgaaggaatgctgtggcaggcatg 52987880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University