View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13612_high_18 (Length: 306)

Name: NF13612_high_18
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13612_high_18
NF13612_high_18
[»] chr8 (4 HSPs)
chr8 (1-306)||(15348521-15348826)
chr8 (248-304)||(4032277-4032333)
chr8 (264-306)||(12199966-12200008)
chr8 (264-306)||(12444394-12444436)
[»] chr4 (29 HSPs)
chr4 (25-306)||(48870201-48870482)
chr4 (25-306)||(48885887-48886168)
chr4 (215-306)||(7771063-7771154)
chr4 (215-301)||(7904696-7904782)
chr4 (224-306)||(48862900-48862985)
chr4 (222-306)||(7789748-7789832)
chr4 (215-306)||(48170914-48171008)
chr4 (224-306)||(48852316-48852401)
chr4 (215-301)||(7774157-7774243)
chr4 (215-301)||(7877384-7877470)
chr4 (224-301)||(7822633-7822710)
chr4 (215-303)||(33134151-33134242)
chr4 (249-306)||(45372419-45372476)
chr4 (215-306)||(7238048-7238139)
chr4 (224-306)||(48735649-48735734)
chr4 (220-306)||(49041471-49041557)
chr4 (216-301)||(7765285-7765370)
chr4 (222-302)||(45366553-45366636)
chr4 (215-302)||(33133700-33133790)
chr4 (227-306)||(48148022-48148104)
chr4 (246-306)||(48156786-48156846)
chr4 (25-205)||(48875606-48875786)
chr4 (232-306)||(48891068-48891143)
chr4 (224-301)||(7800301-7800378)
chr4 (74-161)||(45366402-45366489)
chr4 (248-306)||(7907984-7908042)
chr4 (25-111)||(50250925-50251011)
chr4 (248-306)||(50251169-50251227)
chr4 (228-301)||(7813144-7813217)
[»] chr1 (4 HSPs)
chr1 (224-301)||(24309841-24309918)
chr1 (235-306)||(24366814-24366885)
chr1 (224-306)||(24340073-24340155)
chr1 (224-306)||(24322121-24322203)
[»] scaffold0508 (1 HSPs)
scaffold0508 (228-306)||(11921-11999)
[»] chr5 (4 HSPs)
chr5 (25-102)||(29696075-29696152)
chr5 (224-301)||(29712806-29712883)
chr5 (215-306)||(29687710-29687801)
chr5 (234-301)||(29695816-29695883)
[»] chr3 (1 HSPs)
chr3 (224-306)||(47452247-47452326)
[»] chr6 (1 HSPs)
chr6 (232-306)||(21979989-21980063)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 15348826 - 15348521
Alignment:
Q  1 caataggagacaaaggtcctgttctgtgaagtacggtggatggattccatagatagaggttttaataatagttcaaaagtacaaagcctctacatgaacc 100  Q
    ||||||| ||||||||| || ||||||||| | |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  15348826 caataggggacaaaggtacttttctgtgaaatccggtggatggattccatagatagaggattgaataatagttcaaaagtacaaagcctctacatgaacc 15348727  T
Q  101 ttccatttcaaaatcagaatgatgttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaa 200  Q
    ||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  15348726 tttaatttcaaaatcagaatgattttgtggatgtagaaaatcaacattgagtgaagcagaagtagaataatcatcaagcgatgctgctaaatctatagaa 15348627  T
Q  201 tgaggtagatgacctatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348626 tgaggtagatgacctatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaacc 15348527  T
Q  301 aagact 306  Q
    ||||||    
T  15348526 aagact 15348521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 4032277 - 4032333
Alignment:
Q  248 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaaga 304  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||||||  ||||||||    
T  4032277 ggtaatttgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaaga 4032333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 12200008 - 12199966
Alignment:
Q  264 gaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    |||||||| |||| |||||||||||||||||||||||| ||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgact 12199966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 12444436 - 12444394
Alignment:
Q  264 gaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    |||||||| |||| |||||||||||||||||||||||| ||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgact 12444394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 306
Target Start/End: Complemental strand, 48870482 - 48870201
Alignment:
Q  25 tgtgaagtacggtggatggattccatagatagaggttttaataatagttcaaaagtacaaagcctctacatgaaccttccatttcaaaatcagaatgatg 124  Q
    |||||| | ||||||||||||||||||| |||||| ||  |  | | | ||| | || ||||||||||||||||||||  |||||||||||| ||| |      
T  48870482 tgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatttcaaaatcataataaga 48870383  T
Q  125 ttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgaggtagatgacctatgcacaaa 224  Q
    ||  ||| | |||||||||| ||||| ||||| |||  ||||||||| | ||||||||| | |||||||||||||| ||||  |  |    ||| ||| |    
T  48870382 ttcaggaagcagaaaatcaagattgactgaagaagagatagaatcataagcaagcgatgcttctaaatctatagaacgaggaggtggtgagatgaacaga 48870283  T
Q  225 attctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    || |||||||||||||||||||| || |  ||||||||||||||||| ||    ||||| ||||||||| ||||||||||||    
T  48870282 atcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagact 48870201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 306
Target Start/End: Complemental strand, 48886168 - 48885887
Alignment:
Q  25 tgtgaagtacggtggatggattccatagatagaggttttaataatagttcaaaagtacaaagcctctacatgaaccttccatttcaaaatcagaatgatg 124  Q
    |||||| | ||||||||||||||||||| |||||| ||  |  | | | ||| | || ||||||||||||||||||||  |||||||||||| ||| |      
T  48886168 tgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaacctttaatttcaaaatcataataaga 48886069  T
Q  125 ttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgaggtagatgacctatgcacaaa 224  Q
    ||  ||| | |||||||||| ||||| ||||| |||  ||||||||| | ||||||||| | |||||||||||||| ||||  |  |    ||| ||| |    
T  48886068 ttcaggaagcagaaaatcaagattgactgaagaagagatagaatcataagcaagcgatgcttctaaatctatagaacgaggaggtggtgagatgaacaga 48885969  T
Q  225 attctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    || |||||||||||||||||||| || |  ||||||||||||||||| ||    ||||| ||||||||| ||||||||||||    
T  48885968 atcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagact 48885887  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 7771154 - 7771063
Alignment:
Q  215 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    |||||| |||| ||||| |||||||||||| | || || |||||||||||||||| | |||| |||||||||||||||||||||||||||||    
T  7771154 tatgcataaaaatctacaagtgtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagact 7771063  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 7904782 - 7904696
Alignment:
Q  215 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaacca 301  Q
    |||||||| ||||||| ||||||  | ||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  7904782 tatgcacataattctaggagtgttagctgcggcggtgagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacca 7904696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 48862985 - 48862900
Alignment:
Q  224 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaagact 306  Q
    ||||||| | |||||||||||||| |||| |||||||||||||||||| |||| ||||||   |||||||||||||||||||||||    
T  48862985 aattctatgggtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagact 48862900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 306
Target Start/End: Complemental strand, 7789832 - 7789748
Alignment:
Q  222 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    |||| ||||| |||||||||||||| || || |||||||||||||||| | |||| |||||| ||||||| ||||||||||||||    
T  7789832 aaaaatctacaagtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagact 7789748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 48170914 - 48171008
Alignment:
Q  215 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaagact 306  Q
    |||| ||| |||| ||||||||||||||  |||||||||||||||||| |||||||| |||| ||||||   ||||||||||| |||||||||||    
T  48170914 tatgaacataattttacgagtgtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagact 48171008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 48852401 - 48852316
Alignment:
Q  224 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaagga---tcagagataagagaaaaccaagact 306  Q
    |||||||||||||||||||| ||| ||||||| |||||| |||||||| |||| ||||   | |||||||||||||||||||||||    
T  48852401 aattctacgagtgtgtgttgaggcagtaatttcaaaatgcgaatttgcaaagtgaggattgtgagagataagagaaaaccaagact 48852316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 7774157 - 7774243
Alignment:
Q  215 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaacca 301  Q
    |||||||| ||||||| ||||||| |||| || ||| | |||||||||||||||||| || |  |||||||||||||||||||||||    
T  7774157 tatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaacca 7774243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 7877470 - 7877384
Alignment:
Q  215 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaacca 301  Q
    |||||||| ||||||| ||||||| |||| || ||| | |||||||||||||||||| || |  |||||||||||||||||||||||    
T  7877470 tatgcacataattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaacca 7877384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 7822710 - 7822633
Alignment:
Q  224 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaacca 301  Q
    |||||||||||| |||||||| | ||| | |||||| ||||||||||| ||||  |||||||||||||||||||||||    
T  7822710 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagtggggatcagagataagagaaaacca 7822633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 33134151 - 33134242
Alignment:
Q  215 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaag 303  Q
    |||| ||| |||| ||| ||||||||||| |||||| |||||||||||||||||||| |||| ||||||   ||||||||||||||| ||||    
T  33134151 tatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaag 33134242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 45372419 - 45372476
Alignment:
Q  249 gtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    ||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagact 45372476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 7238048 - 7238139
Alignment:
Q  215 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    |||||| ||||  |||||||| || ||||| | ||||  ||| |||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  7238048 tatgcataaaaacctacgagtatgcgttgcagaggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagact 7238139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 48735649 - 48735734
Alignment:
Q  224 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagact 306  Q
    ||||||||||||||| |||  ||||||||||| ||||||||||||||| || | || ||||   ||||||||||||||||||||||    
T  48735649 aattctacgagtgtgggttatggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagact 48735734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 49041471 - 49041557
Alignment:
Q  220 acaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    |||||||||||||  |||| |||| || ||||| || |||||| |||||||| || |  ||||||||||||||||||||||||||||    
T  49041471 acaaaattctacggttgtgggttgggggggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagact 49041557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 7765370 - 7765285
Alignment:
Q  216 atgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaacca 301  Q
    ||||| |||| ||||||||||||| ||||   | ||| ||| |||||||||||||| |||| |||||||||||||| |||||||||    
T  7765370 atgcataaaaatctacgagtgtgttttgcatggttaagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaacca 7765285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 45366553 - 45366636
Alignment:
Q  222 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaa 302  Q
    |||| ||||||||||||| ||||||||| || |||||||||||||||||| ||||  | |||   |||||||||||||||||||    
T  45366553 aaaactctacgagtgtgttttgcggcggaaagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaa 45366636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 302
Target Start/End: Complemental strand, 33133790 - 33133700
Alignment:
Q  215 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaa 302  Q
    |||| ||| |||| ||| ||||||||||| |||||| ||||||||||| |||||||| |||| | ||||   |||||||||||||||||||    
T  33133790 tatgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgcgaatttgcaaagtgaagatcattagagataagagaaaaccaa 33133700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 48148022 - 48148104
Alignment:
Q  227 tctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaagact 306  Q
    |||| |||||||| |||  ||||| | || |||||||||||||||||||| ||||||   |||||||||||||||||||||||    
T  48148022 tctatgagtgtgttttgaagcggtgagttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagact 48148104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 48156786 - 48156846
Alignment:
Q  246 gcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    ||||||||||||||||| |||||||| || | || ||| ||||||||||||||||||||||    
T  48156786 gcggtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagact 48156846  T

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Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 48875786 - 48875606
Alignment:
Q  25 tgtgaagtacggtggatggattccatagatagaggttttaataatagttcaaaagtacaaagcctctacatgaaccttccatttcaaaatcagaatgatg 124  Q
    |||||| | ||||||||||||||||||| |||||| || || || | | ||| |||| ||||||||| || |||||||  |||||||||||| | | | |    
T  48875786 tgtgaaatccggtggatggattccataggtagaggcttgaaaaacaatgcaacagtataaagcctctgcaagaacctttaatttcaaaatcatagttagg 48875687  T
Q  125 ttgtggatgtagaaaatcaacattgagtgaagcagaagtagaatcatcatcaagcgatgttgctaaatctatagaatgagg 205  Q
    ||  ||| | |||||||||| |||||  | || |||| ||| ||||| | ||||||||| | | ||||||||||| |||||    
T  48875686 ttcaggaagaagaaaatcaagattgaccgcagaagaaatagtatcataaccaagcgatgcttccaaatctatagactgagg 48875606  T

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Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 48891143 - 48891068
Alignment:
Q  232 gagtgtgtgttgcgg-cggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    |||||||||||| || |||||| ||||||||| |||||||| || | |||||| |||| |||||||||||||||||    
T  48891143 gagtgtgtgttgggggcggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagact 48891068  T

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Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 7800378 - 7800301
Alignment:
Q  224 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaacca 301  Q
    |||||||||||| |||||||| | ||| | |||||| ||||||||||| |||   |||||||||| ||||||||||||    
T  7800378 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagcggggatcagagacaagagaaaacca 7800301  T

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Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 45366402 - 45366489
Alignment:
Q  74 caaaagtacaaagcctctacatgaaccttccatttcaaaatcagaatgatgttgtggatgtagaaaatcaacattgagtgaagcagaa 161  Q
    |||||||| ||||||||||||||||||||  |||| || |||||||| |  ||  ||| | ||||||| || ||||||||||||||||    
T  45366402 caaaagtataaagcctctacatgaacctttaatttgaagatcagaataagattcgggaagcagaaaatgaagattgagtgaagcagaa 45366489  T

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Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 7908042 - 7907984
Alignment:
Q  248 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    ||||| |||||||||||||||||| || |  ||| ||||||||||||||||||| ||||    
T  7908042 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgact 7907984  T

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Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 50250925 - 50251011
Alignment:
Q  25 tgtgaagtacggtggatggattccatagatagaggttttaataatagttcaaaagtacaaagcctctacatgaaccttccatttcaa 111  Q
    |||||||  ||||||||||||||||||| |||||| || || || |||  |||| || ||| ||||||||||||||||  |||||||    
T  50250925 tgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaatttcaa 50251011  T

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Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 50251169 - 50251227
Alignment:
Q  248 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    ||||| |||||||||  |||||||  |||  ||||||||||||||||||||||||||||    
T  50251169 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagact 50251227  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 7813217 - 7813144
Alignment:
Q  228 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaacca 301  Q
    |||||||| |||||||| | ||| | |||||| ||||| ||||| ||||  || ||||||||||||||||||||    
T  7813217 ctacgagtatgtgttgcagtggtgaattgaaattgtgactttgcaaagtggggttcagagataagagaaaacca 7813144  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 24309918 - 24309841
Alignment:
Q  224 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaacca 301  Q
    ||||||||| ||||||||||  |  |||| |||||||||||||||||| |||| || |||||||||||||||||||||    
T  24309918 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaacca 24309841  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 24366885 - 24366814
Alignment:
Q  235 tgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    |||||||||| || ||||| ||||| ||||||||||| ||||||||||  ||||||||||||||||| ||||    
T  24366885 tgtgtgttgcagcagtaatctgaaactgtgaatttgcaaagtaaggatttgagataagagaaaaccatgact 24366814  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 24340155 - 24340073
Alignment:
Q  224 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    ||||||| ||||||||||||| || |||| |||||| ||||||||||| |||| |  |||||||||||| |||||||| ||||    
T  24340155 aattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgact 24340073  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 24322203 - 24322121
Alignment:
Q  224 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    ||||| ||||||||||||||| || ||| |  |||| ||||||||||| ||   |||||  ||||||||||||||||||||||    
T  24322203 aattcgacgagtgtgtgttgcagcagtattcagaaactgtgaatttgcaaaacgaggatttgagataagagaaaaccaagact 24322121  T

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Target: scaffold0508 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 11999 - 11921
Alignment:
Q  228 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    ||||||||||||||||  |  |||| |||||||||||||||||| |||| |  ||||||||||||||||||||| ||||    
T  11999 ctacgagtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgact 11921  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 29696152 - 29696075
Alignment:
Q  25 tgtgaagtacggtggatggattccatagatagaggttttaataatagttcaaaagtacaaagcctctacatgaacctt 102  Q
    |||||| | |||||||||||||||||| | ||||| || | ||| |||||||||||| |||||||||||| |||||||    
T  29696152 tgtgaaatccggtggatggattccatatacagaggcttgagtaacagttcaaaagtataaagcctctacacgaacctt 29696075  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 29712806 - 29712883
Alignment:
Q  224 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaacca 301  Q
    ||||||| ||| |||||||  |||||||| ||||||||||||||||||||| | ||  | ||||||||||||||||||    
T  29712806 aattctaggagcgtgtgttttggcggtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaacca 29712883  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 29687801 - 29687710
Alignment:
Q  215 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    |||| ||| ||||||| |||||||||    |||||||| ||||||||| |||||||| |||| ||| | ||| || ||||||||||||||||    
T  29687801 tatgaacagaattctaggagtgtgtgcattggcggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagact 29687710  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 29695883 - 29695816
Alignment:
Q  234 gtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaacca 301  Q
    |||||||| |||| ||||| |||||||||||||||||| |||| ||| | ||| |||||||| |||||    
T  29695883 gtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataacca 29695816  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 47452247 - 47452326
Alignment:
Q  224 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    |||||||||||||||||   ||||||||| || ||||||||  ||||| |||  |||||||||||||||||||||||| ||||    
T  47452247 aattctacgagtgtgtg---cggcggtaagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgact 47452326  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 21979989 - 21980063
Alignment:
Q  232 gagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagact 306  Q
    |||||||||||||||||| ||  | |||||||||||| || ||||  |||| |||||| ||||||||||||||||    
T  21979989 gagtgtgtgttgcggcggcaagatcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagact 21980063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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