View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13612_high_23 (Length: 236)
Name: NF13612_high_23
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 53868449 - 53868240
Alignment:
| Q |
11 |
atatgacccaagtactctacaaaatacctatgcaacaaaggcaatccataatttctatggtatattggcgtaatgaacacttaaatatcatttttcacct |
110 |
Q |
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| T |
53868449 |
atatgacccaagtactctacaaaatacctatgtaacaaaggcaatccataatttctatgttatattggcgtaatgaacacttaaatatcatttttcacct |
53868350 |
T |
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| Q |
111 |
gtcattggcgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcacaagatat |
210 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53868349 |
gtcatgaacgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcacaagatat |
53868250 |
T |
|
| Q |
211 |
ttcttgtttc |
220 |
Q |
| |
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|||||||||| |
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| T |
53868249 |
ttcttgtttc |
53868240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 54158865 - 54159070
Alignment:
| Q |
15 |
gacccaagtactctacaaaatacctatgcaacaaaggcaatccataatttctatggtatattggcgtaatgaacacttaaatatcatttttcacctgtca |
114 |
Q |
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| T |
54158865 |
gacccacgtattttacaaaatccctatgtaacaaaggtagtccctattttcaatggtatataggcataatgaacacttaaatatcatcattcacctgtca |
54158964 |
T |
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| Q |
115 |
ttggcgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcacaagatatttct |
214 |
Q |
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| | | || ||||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54158965 |
tgaacaataattgcaatgtcacaagaggccaaagactccttattcgccagcagccctttaactccatcttcaggaatctctctcagcacaagatatttct |
54159064 |
T |
|
| Q |
215 |
tgtttc |
220 |
Q |
| |
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| |||| |
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| T |
54159065 |
tctttc |
54159070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 51365889 - 51365983
Alignment:
| Q |
127 |
gcaacgtcacaagaggccaaagacttattattcgccagcagctctcta-actccatcttcaggaatttctctcagcacaagatatttcttgtttc |
220 |
Q |
| |
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|||| |||||||||||||||||||| ||||| |||||||| ||||| |||||||||||| |||| ||| ||| |||||||||||||||||||| |
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| T |
51365889 |
gcaatgtcacaagaggccaaagactccttattagccagcagttctcttgactccatcttcatgaatctctttcaacacaagatatttcttgtttc |
51365983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 15048241 - 15048355
Alignment:
| Q |
105 |
tcacctgtcattggcgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcaca |
204 |
Q |
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|
||||||||||| | |||| ||||| |||||| |||||||||||||| ||||| || ||||||| | | ||||| |||||| ||| |||||||||||| |
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| T |
15048241 |
tcacctgtcataaacaaaaattgcaatgtcacatgaggccaaagacttcttattggctagcagctttgtgactcctccttcagaaatctctctcagcaca |
15048340 |
T |
|
| Q |
205 |
agatatttcttgttt |
219 |
Q |
| |
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|||||||| |||||| |
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| T |
15048341 |
agatattttttgttt |
15048355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 17881024 - 17881122
Alignment:
| Q |
121 |
aaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcacaagatatttcttgttt |
219 |
Q |
| |
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||||| |||| |||||| ||||||||||||| ||||| || ||||||| | | |||||| |||||| ||| |||||||||||||||||||| |||||| |
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| T |
17881024 |
aaaaccgcaatgtcacatgaggccaaagactccttattggctagcagctttgtgactccaccttcagaaatctctctcagcacaagatattttttgttt |
17881122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 14773768 - 14773855
Alignment:
| Q |
132 |
gtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcacaagatatttcttgttt |
219 |
Q |
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|||||| ||||||||||||| || || |||||||||||| | |||||| ||||| ||| ||||||| |||||||||||| |||||| |
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| T |
14773768 |
gtcacatgaggccaaagactccttgttggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttgttt |
14773855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 15015504 - 15015618
Alignment:
| Q |
105 |
tcacctgtcattggcgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcaca |
204 |
Q |
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||||||||||| | |||||||||| |||||| ||| ||| ||||| || || || ||||||| | |||||||| |||||| ||| |||||||||||| |
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| T |
15015504 |
tcacctgtcatgaacaaaaactgcaatgtcacatgagcccagagactccttgtttgctagcagctttgtaactccaccttcagaaatctctctcagcaca |
15015603 |
T |
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| Q |
205 |
agatatttcttgttt |
219 |
Q |
| |
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| |||||| |||||| |
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| T |
15015604 |
atatattttttgttt |
15015618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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