View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13612_high_6 (Length: 500)
Name: NF13612_high_6
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 21 - 487
Target Start/End: Original strand, 37969083 - 37969549
Alignment:
| Q |
21 |
ggccgcgcccaccatgacaatatgtacatcgttcaatttccaaaggatcaagtctaccgcgttccaccaagtgaaaatgcattcatcgttgaaagttatc |
120 |
Q |
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| T |
37969083 |
ggccgcgcccaccatgacaatatgtacatcgttcaatttccaaaggatcaagtctaccgcgttccaccaagtgaaaatgcattcatcgttgaaagttatc |
37969182 |
T |
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| Q |
121 |
gtaatactaccaaggataagnnnnnnnnnnnncaacgtggttgttgttgccctcgattcttgctcaccattgttttaatccttgttacaatcgttgccgt |
220 |
Q |
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| T |
37969183 |
gcaatactaccaatgataagaaaaagaaaaaacaacgtggttgttgttgccctcgattcttgctcaccattgttttaatccttgttacaatcgttgctgt |
37969282 |
T |
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| Q |
221 |
tgttggaataacattagccacattgttctttgttttcaacccagagggacccacatttactattacccgctttgaggtaaaaaacgtcactaggccacca |
320 |
Q |
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| T |
37969283 |
tgttggaataacattagccacattgttctttgttttcaacccagagggacccacatttactattacccgctttgaggtaaaaaacgttactaggccacca |
37969382 |
T |
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| Q |
321 |
cattatgaaatttatttgaaggctaagaatccaaataaaaggttgggaatcgtttacgtaaattctgaggcttctatgcttttcgacgatactgtggttt |
420 |
Q |
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| T |
37969383 |
cattatgaaatttatttgaaggctaagaatccaaataaaaggttgggaatcgtttacgtaaattctgaggcttctatgcttttcgacgatactgtggttg |
37969482 |
T |
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| Q |
421 |
ctaaggggaaatttacaaagttgatggaacatggtgtagatgcttcgacacaatttaaggttgttgt |
487 |
Q |
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| T |
37969483 |
ctaaggggaaatttacaaagttgatggaacaaagtgtagatgcttcgacacaatttaaggttgttgt |
37969549 |
T |
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