View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13612_high_7 (Length: 480)
Name: NF13612_high_7
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 3 - 463
Target Start/End: Original strand, 37836305 - 37836765
Alignment:
| Q |
3 |
ttgtgaattaacaaaatctgtggagaagagactatcaataggacaaagcataaacgattagaaacataagtagctaaaagccacagcccatttgaaatct |
102 |
Q |
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| T |
37836305 |
ttgtgaattaacaaaatctgtggagtagagactatcaataggacaaagcataaacgattagaaacataagtagctaaaagccacagcccatttgaaattt |
37836404 |
T |
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| Q |
103 |
aagttaaatttaatctaaacttgtctaagtttttatgattcgtgtatgnnnnnnnnnnnnnnnnnnnngtcacttacttaaaccaggctatatggcaaca |
202 |
Q |
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| T |
37836405 |
aagttaaatttaatctaaacttgtctaagtttttatgattcgtgtatgttttttagaattttgtttttgtcacttacttaaaccaggctatatggcaaca |
37836504 |
T |
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| Q |
203 |
tagggttaaacaattgctagcagcctagcacatgtatggctattctctgattttgttaaaacctgtaaattaaaatctgttttataattttagagttcag |
302 |
Q |
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| T |
37836505 |
tagggttaaacaattgctagcagcctagcacatgtatggctattctctgattttgttaaaacctgtaaattaaaatctgttttataattttagagttcag |
37836604 |
T |
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| Q |
303 |
aatatactaaaatagaaatagcttgttttatagtatcaatattaaaatatggaatcaagaatactctgtaaaagaaaaactatgttatttgattaattaa |
402 |
Q |
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| T |
37836605 |
aatatactaaaatagaaatagcttgttttatagtatcaatattaaaatatggaatcaagaatactctgtaaaagaaaaactatgttatttgattaattaa |
37836704 |
T |
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| Q |
403 |
gggcttgatagttttattcaattattgtttcttagagcatctccgatgctcattttttagg |
463 |
Q |
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| T |
37836705 |
ggggttgatagttttattcaattattgtttcttagagcatctccgattctcattttttagg |
37836765 |
T |
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