View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13612_low_1 (Length: 828)
Name: NF13612_low_1
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 791; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 791; E-Value: 0
Query Start/End: Original strand, 12 - 814
Target Start/End: Original strand, 35489503 - 35490305
Alignment:
| Q |
12 |
atcaatgacaacattagaaacaaactttttccaaaaccaatgagacttccacactttattcatttcttcaatgggaacgttgtttgtctcaggaagaaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35489503 |
atcaatgacaacattagaaacaaactttttccaaaaccaatgagacttccacactttattcatttcttcaatgggaacgttgtttgtctcaggaagaaac |
35489602 |
T |
|
| Q |
112 |
aaggcaacgaaaattgacatgatgagcacaaagccagcaaagaagaagaaaagtccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35489603 |
aaggcaacgaaaattgacatgatgagcacaaagccagcaaagaagaagaaaagtccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatga |
35489702 |
T |
|
| Q |
212 |
taaaggtgaacaacatgttcactgcaacattggtagcttgacctgcagatcggacttcaagagagcatatttcactaggaactaaccatcccaacgcacc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
35489703 |
taaaggtgaacaacatgttcactgcaacattggtagcttgacctgcagatcggacttcaagagagcatatttcactgggaactaaccatcccagcgcacc |
35489802 |
T |
|
| Q |
312 |
ccaagaccatgcaaatgccgcaacatatagacatataaagactaagagaagatcagcttcggtttttgtaaacgagccttcaccgctaactccaagtttg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35489803 |
ccaagaccatgcaaatgccgcaacatatagacatataaagactaagagaagatcagcttcagtttttgtaaacgagccttcaccgctaactccaagtttg |
35489902 |
T |
|
| Q |
412 |
atagcaatcatacttccaacagcaatctacaatcaatgattatatcctttatattatttatgcttggaaacgacttatgtataataattttgaaggctta |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35489903 |
atagcaatcatacttccaacagcaatctacaatcaatgattatatcctttatattatttatgcttggaaacgacttatgtataataattttgaaggctta |
35490002 |
T |
|
| Q |
512 |
attaatataaataattaattatagttaagttgaagttttcacctggcaaataaacatttggataccgccttcaaggaacaaagtccttcgtccaaatttg |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35490003 |
attaatataaataattaattatagttaagttgaagttttcacctggcaaataaacatttggataccgccttcaaggaacaaagtccttcgtccaaatttg |
35490102 |
T |
|
| Q |
612 |
tccaccgtatagatggaaattaaagtagcaacaacattaacacctccgctaattactgcagaaatgagagaagcatcatttccaaagcccagagttttga |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35490103 |
tccaccgtatagatggaaattaaagtagcaacaacattaacacctccgctaattactgcagaaatgagagaagcatcatttccaaagcccagagttttga |
35490202 |
T |
|
| Q |
712 |
aaaggacaggtgcataaaacatgataacattgattccggtgagttgttggaagaatggaatgagagagcaaaaagtgagttgaggcctgtatcttgtttg |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35490203 |
aaaggacaggtgcataaaacatgataacattgattccggtgagttgttggaagaatggaatgagagagcaaaaagtgagttgaggcctgtatcttgtttg |
35490302 |
T |
|
| Q |
812 |
tgt |
814 |
Q |
| |
|
||| |
|
|
| T |
35490303 |
tgt |
35490305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 327
Target Start/End: Original strand, 18233837 - 18233999
Alignment:
| Q |
165 |
tccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaacatgttcactgcaacattggtagcttgacctgcagatcgg |
264 |
Q |
| |
|
||||||||||| |||||||||||| ||| |||| ||||||||||||||||||| | | |||||| || | |||||| || |||| | ||||| || |
|
|
| T |
18233837 |
tccaaacttcatgtgacaaagcattgtagtgaaaatttgagcaatgataaaggtgcaaatcatgttaacagagacattgatactttgagccgcagaacga |
18233936 |
T |
|
| Q |
265 |
acttcaagagagcatatttcactaggaactaaccatcccaacgcaccccaagaccatgcaaat |
327 |
Q |
| |
|
||||| || | | |||||||||| || || ||||| || | | ||||||||||||||||||| |
|
|
| T |
18233937 |
acttcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaat |
18233999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 3e-69; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 35 - 372
Target Start/End: Complemental strand, 14233417 - 14233080
Alignment:
| Q |
35 |
actttttccaaaaccaatgagacttccacactttattcatttcttcaatgggaacgttgtttgtctcaggaagaaacaaggcaacgaaaattgacatgat |
134 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| | |||||||||||||| ||||| || || |||||||| | || | |||| |||||| | |||||| |
|
|
| T |
14233417 |
actttgtccaaaaccaatgcgacttccacaccctgttcatttcttcaattggaacatttttggtctcaggtaaaaggacagcaatgaaaatggtcatgat |
14233318 |
T |
|
| Q |
135 |
gagcacaaagccagcaaagaagaagaaaagtccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaacatgttcact |
234 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
14233317 |
tgccacaaaaccagcaaagaaaaagaaaaggccaaacttcaagtgacaaagcatggttaggaagacttgagcaatcataaatgtgaagaacatgttcacc |
14233218 |
T |
|
| Q |
235 |
gcaacattggtagcttgacctgcagatcggacttcaagagagcatatttcactaggaactaaccatcccaacgcaccccaagaccatgcaaatgccgcaa |
334 |
Q |
| |
|
|||||||| ||||||||||||| | ||| || || |||| ||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||| |
|
|
| T |
14233217 |
gcaacatttatagcttgacctgctggtcgaacctctagagcgcatatttcactaggcactaaccaacccaatggtccccaagaccatgcaaatgccgcaa |
14233118 |
T |
|
| Q |
335 |
catatagacatataaagactaagagaagatcagcttcg |
372 |
Q |
| |
|
||||| ||| ||||||| |||||||| || |||||| |
|
|
| T |
14233117 |
catatgcacaaataaagaacaagagaaggtcggcttcg |
14233080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 27 - 372
Target Start/End: Complemental strand, 14243099 - 14242754
Alignment:
| Q |
27 |
agaaacaaactttttccaaaaccaatgagacttccacactttattcatttcttcaatgggaacgttgtttgtctcaggaagaaacaaggcaacgaaaatt |
126 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||||||||||| | |||||||||||||| ||||| || || |||||||| | || | |||| |||||| |
|
|
| T |
14243099 |
agaaacatactttgtccaaaaccaatgcgacttccacaccctgttcatttcttcaattggaacatttttagtctcaggtaaaaggacagcaatgaaaatg |
14243000 |
T |
|
| Q |
127 |
gacatgatgagcacaaagccagcaaagaagaagaaaagtccaaacttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaacaaca |
226 |
Q |
| |
|
| |||||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |||| |
|
|
| T |
14242999 |
gtcatgattgccacaaaaccagcaaagaaaaagaaaaggccaaacttcaagtgacaaagcatggttaggaagacttgagcaatcataaatgtgaagaaca |
14242900 |
T |
|
| Q |
227 |
tgttcactgcaacattggtagcttgacctgcagatcggacttcaagagagcatatttcactaggaactaaccatcccaacgcaccccaagaccatgcaaa |
326 |
Q |
| |
|
||||||| |||||||| ||||||||||||| | ||| || || |||| ||||| ||||||||| |||||||| ||||| | ||||||||||||||||| |
|
|
| T |
14242899 |
tgttcaccgcaacatttatagcttgacctgctggtcgaacctctagagcgcatacttcactaggcactaaccaacccaatggtccccaagaccatgcaaa |
14242800 |
T |
|
| Q |
327 |
tgccgcaacatatagacatataaagactaagagaagatcagcttcg |
372 |
Q |
| |
|
||||||||||||| ||| ||||||| |||||||| || |||||| |
|
|
| T |
14242799 |
tgccgcaacatatgcacaaataaagaacaagagaaggtcggcttcg |
14242754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 30 - 371
Target Start/End: Complemental strand, 51580862 - 51580515
Alignment:
| Q |
30 |
aacaaactttttccaaaaccaatgagacttccacactttattcatttcttcaatgggaacgttgtttgtctcaggaagaaacaaggcaacgaaaattgac |
129 |
Q |
| |
|
|||||| ||| ||||||||||||| || |||| |||||| | ||||||||||| || | || |||||||| || || || ||||||| || | | | |
|
|
| T |
51580862 |
aacaaattttgtccaaaaccaatgtgatttccgtactttactaatttcttcaattgggagattctttgtctcggggaggaagaaggcaataaagacggtc |
51580763 |
T |
|
| Q |
130 |
atgatgagcacaaagccagcaaagaagaagaaaagtcca--aa-----cttcaagtgacaaagcatggtaagaaaaacttgagcaatgataaaggtgaac |
222 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| | | || ||||||||||||||||||| | || ||||||||||||| | ||| ||||| |
|
|
| T |
51580762 |
atgataagcacaaaaccagcaaagaagaagaaaacttgagcaagttttcttcaagtgacaaagcatgttgaggaaaacttgagcaacaacaaatgtgaat |
51580663 |
T |
|
| Q |
223 |
aacatgttcactgcaacattggtagcttgacctgcagatcggacttcaagagagcatatttcactaggaactaaccatcccaacgcaccccaagaccatg |
322 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||| || |||||||| || |||||||| || | |||| || | || |||||||||| | |
|
|
| T |
51580662 |
aacatgttcacggcaacattgatagcttgacctgcagatcaaacctcaagagaacaaatttcacttgg-tccgaccaacctagcgggccccaagacccag |
51580564 |
T |
|
| Q |
323 |
caaatgccgcaacatatagacatataaagactaagagaagatcagcttc |
371 |
Q |
| |
|
||||||||||||||||| || |||||||| ||| ||||| || ||||| |
|
|
| T |
51580563 |
caaatgccgcaacatatgcacttataaagaataaaagaagctcggcttc |
51580515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 636 - 774
Target Start/End: Complemental strand, 14232808 - 14232670
Alignment:
| Q |
636 |
gtagcaacaacattaacacctccgctaattactgcagaaatgagagaagcatcatttccaaagcccagagttttgaaaaggacaggtgcataaaacatga |
735 |
Q |
| |
|
|||||||||||||| ||||| || ||||| || | ||| ||||| |||||||||| |||||||| | | || |||||||| || || |||||||||| |
|
|
| T |
14232808 |
gtagcaacaacattgacaccaccactaataaccgaagacatgagggaagcatcatcaccaaagcctaagatcttaaaaaggacgggagcgtaaaacatga |
14232709 |
T |
|
| Q |
736 |
taacattgattccggtgagttgttggaagaatggaatga |
774 |
Q |
| |
|
||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
14232708 |
taacattaatgccggtaagttgttggaagaatggaatga |
14232670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 636 - 774
Target Start/End: Complemental strand, 14242482 - 14242344
Alignment:
| Q |
636 |
gtagcaacaacattaacacctccgctaattactgcagaaatgagagaagcatcatttccaaagcccagagttttgaaaaggacaggtgcataaaacatga |
735 |
Q |
| |
|
|||||||||||||| ||||| || ||||| || | ||| ||||| |||||||||| |||||||| | | || |||||||| || || |||||||||| |
|
|
| T |
14242482 |
gtagcaacaacattgacaccaccactaataaccgaagacatgagggaagcatcatcaccaaagcctaagatcttaaaaaggacgggagcgtaaaacatga |
14242383 |
T |
|
| Q |
736 |
taacattgattccggtgagttgttggaagaatggaatga |
774 |
Q |
| |
|
||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
14242382 |
taacattaatgccggtaagttgttggaagaatggaatga |
14242344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 774
Target Start/End: Complemental strand, 14240709 - 14240571
Alignment:
| Q |
636 |
gtagcaacaacattaacacctccgctaattactgcagaaatgagagaagcatcatttccaaagcccagagttttgaaaaggacaggtgcataaaacatga |
735 |
Q |
| |
|
|||||||||||||| ||||| || ||||| || ||||| ||||| || || |||| |||||||| | | || |||||||| | || |||||||||| |
|
|
| T |
14240709 |
gtagcaacaacattgacaccaccactaataaccgcagacatgagggatgcctcatcaccaaagcctaagatcttaaaaaggacgagagcgtaaaacatga |
14240610 |
T |
|
| Q |
736 |
taacattgattccggtgagttgttggaagaatggaatga |
774 |
Q |
| |
|
||||||| || | ||| |||| ||||||||||||||||| |
|
|
| T |
14240609 |
taacattaatgctggtaagttcttggaagaatggaatga |
14240571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 717 - 769
Target Start/End: Complemental strand, 36202318 - 36202266
Alignment:
| Q |
717 |
acaggtgcataaaacatgataacattgattccggtgagttgttggaagaatgg |
769 |
Q |
| |
|
||||||||||||||||||||||||||||| || || | ||||||||||||||| |
|
|
| T |
36202318 |
acaggtgcataaaacatgataacattgatgcctgtaaattgttggaagaatgg |
36202266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 717 - 772
Target Start/End: Original strand, 35922740 - 35922795
Alignment:
| Q |
717 |
acaggtgcataaaacatgataacattgattccggtgagttgttggaagaatggaat |
772 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || | ||| |||||||||||||| |
|
|
| T |
35922740 |
acaggtgcataaaacattataacattgattcctgtaaattgctggaagaatggaat |
35922795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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