View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13612_low_10 (Length: 438)
Name: NF13612_low_10
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 419
Target Start/End: Complemental strand, 27676590 - 27676178
Alignment:
| Q |
7 |
agaagtcagcagaagcacgccactggcggctataactgtgtgatggtcgctactagtagttagacatatagccacgtgtcaaattccaattggatctccc |
106 |
Q |
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| T |
27676590 |
agaagtcagcagaagcacgccactggcggctataactctgtgatagtcgctactagtagttggacaaatagccacgtgtcatattccaattggattcccc |
27676491 |
T |
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| Q |
107 |
atcgctttgggcaaaaccctacacacgcgcaccatggtcagttaccgaacaaaacgacagaaacatttcgcgtggcacgtttacgttgcgttttgcatgn |
206 |
Q |
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| T |
27676490 |
atcgctttgggcaaaaccctacacacgcgcaccatggtcagttaccgaacaaaacgacagaaacatttcgcgtggcacgtttacgttgcgttttgcatga |
27676391 |
T |
|
| Q |
207 |
nnnnnncaacaacacaagtgcattaa--atagtttgagtttgactaaaatattaaattaataatattaaggtgattttggttttgtggatgcacgagcca |
304 |
Q |
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| T |
27676390 |
aaaaaacaacaacacaagtgcattaactatagtttgagtttgactaaaatattaaattaataatattaaggtgattttggttttgtggatgcacgagcca |
27676291 |
T |
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| Q |
305 |
aagcgtgcacaagtgcatgcgcaaataaaatctacaacatgcttggcattggcacagatctttcattactagactggtagatatagctagatacatataa |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27676290 |
aagcgtgcacaagtgcatgcgcaaataaaatctacaacatgcttggcattggcacagatctttcattactagactggtagatata--tagatacatataa |
27676193 |
T |
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| Q |
405 |
gcagaaactatgaat |
419 |
Q |
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| T |
27676192 |
gcagaaactatgaat |
27676178 |
T |
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