View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13612_low_11 (Length: 410)
Name: NF13612_low_11
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 23)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 23408581 - 23408821
Alignment:
| Q |
18 |
ttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagca |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408581 |
ttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagca |
23408680 |
T |
|
| Q |
118 |
agtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23408681 |
agtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagataccaatgtctgggtgaactt |
23408780 |
T |
|
| Q |
218 |
gtttcagtactttgaatatgtagatcttgtatgtttctaca |
258 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23408781 |
gtttcagaactttgaagatgtagatcttgtatgtttctaca |
23408821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 23453413 - 23453653
Alignment:
| Q |
18 |
ttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453413 |
ttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagca |
23453512 |
T |
|
| Q |
118 |
agtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
23453513 |
agtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacat |
23453612 |
T |
|
| Q |
218 |
gtttcagtactttgaatatgtagatcttgtatgtttctaca |
258 |
Q |
| |
|
| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
23453613 |
gattcagaactttgaagatgtagatcttgtatgtttctaca |
23453653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 23868969 - 23868733
Alignment:
| Q |
18 |
ttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagca |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868969 |
ttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagca |
23868870 |
T |
|
| Q |
118 |
agtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaactt |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23868869 |
agtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacct |
23868770 |
T |
|
| Q |
218 |
gtttcagtactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
| ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
23868769 |
gcttcagaactttgaagatgtagatcttgtatgtttc |
23868733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 23415751 - 23415986
Alignment:
| Q |
19 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415751 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaa |
23415850 |
T |
|
| Q |
119 |
gtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
23415851 |
gtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctg |
23415950 |
T |
|
| Q |
219 |
tttcagtactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| |
|
|
| T |
23415951 |
cttcagaactttgaagatgtagatcttgtatgtttc |
23415986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 24307459 - 24307224
Alignment:
| Q |
19 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307459 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaa |
24307360 |
T |
|
| Q |
119 |
gtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttg |
218 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307359 |
gtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttg |
24307260 |
T |
|
| Q |
219 |
tttcagtactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
|||||| || ||||| || ||||||||||||||||| |
|
|
| T |
24307259 |
tttcagaaccttgaagatatagatcttgtatgtttc |
24307224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 25 - 258
Target Start/End: Complemental strand, 23402304 - 23402071
Alignment:
| Q |
25 |
acagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctgg |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23402304 |
acagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctgg |
23402205 |
T |
|
| Q |
125 |
atgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcag |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
23402204 |
atgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgcttcag |
23402105 |
T |
|
| Q |
225 |
tactttgaatatgtagatcttgtatgtttctaca |
258 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
23402104 |
aactttgaagatgtagatcttgtatgtttctaca |
23402071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 23886063 - 23885828
Alignment:
| Q |
19 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaa |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23886063 |
tcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaa |
23885964 |
T |
|
| Q |
119 |
gtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
23885963 |
gtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctg |
23885864 |
T |
|
| Q |
219 |
tttcagtactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| |
|
|
| T |
23885863 |
cttcagaactttgaagatgtagatcttgtatgtttc |
23885828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 26832971 - 26832736
Alignment:
| Q |
19 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832971 |
tcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaa |
26832872 |
T |
|
| Q |
119 |
gtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttg |
218 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832871 |
gtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctgggtgaacttg |
26832772 |
T |
|
| Q |
219 |
tttcagtactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| |
|
|
| T |
26832771 |
tttcagaaccttgaagatgtagatcttgtatgtttc |
26832736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 26434260 - 26434025
Alignment:
| Q |
19 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26434260 |
tcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaa |
26434161 |
T |
|
| Q |
119 |
gtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttg |
218 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26434160 |
gtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctggatgaacttg |
26434061 |
T |
|
| Q |
219 |
tttcagtactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| |
|
|
| T |
26434060 |
tttcagaaccttgaagatgtagatcttgtatgtttc |
26434025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 26436040 - 26435805
Alignment:
| Q |
19 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaa |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||| || |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26436040 |
tcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaa |
26435941 |
T |
|
| Q |
119 |
gtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttg |
218 |
Q |
| |
|
||||||| |||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26435940 |
gtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctgggtgaacttg |
26435841 |
T |
|
| Q |
219 |
tttcagtactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| |
|
|
| T |
26435840 |
tttcagaaccttgaagatgtagatcttgtatgtttc |
26435805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 34662083 - 34662318
Alignment:
| Q |
19 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaa |
118 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||||||||| || || ||||||||||||||||| ||||| || || ||||||||||| || | |||| |
|
|
| T |
34662083 |
tcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttcttgttataccttgcaa |
34662182 |
T |
|
| Q |
119 |
gtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttg |
218 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34662183 |
gtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttg |
34662282 |
T |
|
| Q |
219 |
tttcagtactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
|||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
34662283 |
tttcagaaccttgaagatgtagatcttgtaggtttc |
34662318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 292 - 402
Target Start/End: Complemental strand, 24307186 - 24307076
Alignment:
| Q |
292 |
gcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtt |
391 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307186 |
gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt |
24307087 |
T |
|
| Q |
392 |
tcttctctgct |
402 |
Q |
| |
|
||||||||||| |
|
|
| T |
24307086 |
tcttctctgct |
24307076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 26832701 - 26832588
Alignment:
| Q |
289 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
388 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26832701 |
ccggcggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26832602 |
T |
|
| Q |
389 |
gtttcttctctgct |
402 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26832601 |
gtttcttctctgct |
26832588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 298 - 398
Target Start/End: Complemental strand, 23402031 - 23401931
Alignment:
| Q |
298 |
gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23402031 |
gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct |
23401932 |
T |
|
| Q |
398 |
c |
398 |
Q |
| |
|
| |
|
|
| T |
23401931 |
c |
23401931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 33 - 165
Target Start/End: Original strand, 23451788 - 23451920
Alignment:
| Q |
33 |
cttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattct |
132 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
23451788 |
cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct |
23451887 |
T |
|
| Q |
133 |
tgagcaagcttctcgaagatatcattgatgaaa |
165 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||| |
|
|
| T |
23451888 |
tgagcgagcttctcaaagatatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 26433990 - 26433877
Alignment:
| Q |
289 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
388 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26433990 |
ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26433891 |
T |
|
| Q |
389 |
gtttcttctctgct |
402 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26433890 |
gtttcttctctgct |
26433877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 26435770 - 26435657
Alignment:
| Q |
289 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
388 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26435770 |
ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26435671 |
T |
|
| Q |
389 |
gtttcttctctgct |
402 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26435670 |
gtttcttctctgct |
26435657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 298 - 398
Target Start/End: Original strand, 23408861 - 23408961
Alignment:
| Q |
298 |
gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23408861 |
gaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct |
23408960 |
T |
|
| Q |
398 |
c |
398 |
Q |
| |
|
| |
|
|
| T |
23408961 |
c |
23408961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 289 - 398
Target Start/End: Original strand, 23416018 - 23416127
Alignment:
| Q |
289 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || | |
|
|
| T |
23416018 |
ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctg |
23416117 |
T |
|
| Q |
389 |
gtttcttctc |
398 |
Q |
| |
|
|||||||||| |
|
|
| T |
23416118 |
gtttcttctc |
23416127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 289 - 398
Target Start/End: Complemental strand, 23868698 - 23868589
Alignment:
| Q |
289 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
388 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868698 |
ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgg |
23868599 |
T |
|
| Q |
389 |
gtttcttctc |
398 |
Q |
| |
|
|||||||||| |
|
|
| T |
23868598 |
gtttcttctc |
23868589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 23885793 - 23885680
Alignment:
| Q |
289 |
ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg |
388 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
23885793 |
ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctg |
23885694 |
T |
|
| Q |
389 |
gtttcttctctgct |
402 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
23885693 |
gtttcttctctgct |
23885680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 34662359 - 34662463
Alignment:
| Q |
295 |
gctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttct |
394 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
34662359 |
gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttct |
34662458 |
T |
|
| Q |
395 |
tctct |
399 |
Q |
| |
|
||||| |
|
|
| T |
34662459 |
tctct |
34662463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 301 - 398
Target Start/End: Original strand, 23453696 - 23453793
Alignment:
| Q |
301 |
ccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttctc |
398 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
23453696 |
ccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttcttctc |
23453793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 41670636 - 41670401
Alignment:
| Q |
19 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaa |
118 |
Q |
| |
|
||||| ||||||||||| || | |||||| || |||||||| | || |||||||| || |||| ||||||||||| |||||||||||||| | |||| |
|
|
| T |
41670636 |
tcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttcttgttgtacctcgcaa |
41670537 |
T |
|
| Q |
119 |
gtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttg |
218 |
Q |
| |
|
||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| || ||||| || |
|
|
| T |
41670536 |
gtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaatgtcaggatgaacctg |
41670437 |
T |
|
| Q |
219 |
tttcagtactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
|| || || ||||| |||||||||||||| ||||| |
|
|
| T |
41670436 |
cttgagaaccttgaagatgtagatcttgtaggtttc |
41670401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 257
Target Start/End: Complemental strand, 40795999 - 40795767
Alignment:
| Q |
25 |
acagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctgg |
124 |
Q |
| |
|
||||| |||||||| | ||| || |||||||| || | || ||||||||||| || | || ||||| || || ||||||||||| ||||| ||||||| |
|
|
| T |
40795999 |
acagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctgg |
40795900 |
T |
|
| Q |
125 |
atgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcag |
224 |
Q |
| |
|
||||||| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| || ||||| ||||| |||||||| || ||||| || || || |
|
|
| T |
40795899 |
atgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagattccaatgtcaggatgaacctgcttgag |
40795800 |
T |
|
| Q |
225 |
tactttgaatatgtagatcttgtatgtttctac |
257 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||| |
|
|
| T |
40795799 |
aaccttgaagatgtagatcttgtaggtttctac |
40795767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 33216681 - 33216594
Alignment:
| Q |
19 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgt |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
33216681 |
tcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttccttgaagtgattgttggcttcttgt |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 29391699 - 29391467
Alignment:
| Q |
22 |
gaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtc |
121 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||| | | || || || ||||| ||||| || || || || || ||||||||||||||||| | || |
|
|
| T |
29391699 |
gaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccctcgacgtaatcgtcggtttcttgttgtaacgagccaatc |
29391600 |
T |
|
| Q |
122 |
tggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgttt |
221 |
Q |
| |
|
| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| |||||| || ||||| || || || ||||| ||||| |
|
|
| T |
29391599 |
tagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctatatcaggatgaacctgttt |
29391500 |
T |
|
| Q |
222 |
cagtactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
|| || ||||| ||||| ||||| || ||||| |
|
|
| T |
29391499 |
gagaaccttgaagatgtaaatcttataggtttc |
29391467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
| Q |
126 |
tgattcttgagcaagcttctcgaagatatcattgatg |
162 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33216594 |
tgattcttgagcaagcttcacgaagatatcattgatg |
33216558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 40180311 - 40180547
Alignment:
| Q |
18 |
ttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagca |
117 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || ||||||||||| || | ||| |
|
|
| T |
40180311 |
ttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctagcc |
40180410 |
T |
|
| Q |
118 |
agtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaactt |
217 |
Q |
| |
|
| | || ||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || || || ||||| | |
|
|
| T |
40180411 |
aaacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacct |
40180510 |
T |
|
| Q |
218 |
gtttcagtactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
||||||| || ||||| ||||| |||||||| ||||| |
|
|
| T |
40180511 |
gtttcagaaccttgaagatgtatatcttgtaggtttc |
40180547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 47317518 - 47317431
Alignment:
| Q |
19 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgt |
106 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47317518 |
tcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttgaatttcccttgaagtgattgttggcttcttgt |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
| Q |
126 |
tgattcttgagcaagcttctcgaagatatcattgatg |
162 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47317431 |
tgattcttgagcaagcttcacgaagatatcattgatg |
47317395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 14715485 - 14715433
Alignment:
| Q |
19 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagt |
71 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
14715485 |
tcagacacaacatgcttggccaattctccaggaagaacaagtctcactgcagt |
14715433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 14715420 - 14715372
Alignment:
| Q |
350 |
gagctttctcggcgacggtggacttcttctcctctgcgggtttcttctc |
398 |
Q |
| |
|
|||||||||| |||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
14715420 |
gagctttctcctcgacagtgtatttcttctcctctgcgggtttcttctc |
14715372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 254
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
| Q |
129 |
ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtact |
228 |
Q |
| |
|
||||||||| || |||| |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| || || |
|
|
| T |
29684826 |
ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc |
29684727 |
T |
|
| Q |
229 |
ttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
29684726 |
ttgaatatatatatcttgtaggtttc |
29684701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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