View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13612_low_12 (Length: 402)
Name: NF13612_low_12
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 53491767 - 53491396
Alignment:
| Q |
18 |
agatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491767 |
agatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagga |
53491668 |
T |
|
| Q |
118 |
ttcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491667 |
ttcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacct |
53491568 |
T |
|
| Q |
218 |
cctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgt |
317 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491567 |
cctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgt |
53491468 |
T |
|
| Q |
318 |
tgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgat |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491467 |
tgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgat |
53491396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 53499360 - 53498991
Alignment:
| Q |
18 |
agatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagga |
117 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53499360 |
agataagaagggagagaaagcaatggtttggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagaa |
53499261 |
T |
|
| Q |
118 |
ttcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacct |
217 |
Q |
| |
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|||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
53499260 |
ctccttttatgtacgattgcatttatattttagtccgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacct |
53499161 |
T |
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| Q |
218 |
cctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgt |
317 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499160 |
cctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgc |
53499061 |
T |
|
| Q |
318 |
tgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctga |
388 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |
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| T |
53499060 |
tgtgtgaagca-aaaatacgtgctgagttagattctagagatagctactctcctgaaaagaagtattctga |
53498991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 161 - 388
Target Start/End: Complemental strand, 16070303 - 16070077
Alignment:
| Q |
161 |
taacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcctt |
260 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgcctt |
16070204 |
T |
|
| Q |
261 |
acaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagata |
360 |
Q |
| |
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||||| | |||||| | |||||||| ||||| ||||||||||| | ||||| |||||| |||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
16070203 |
acaaaaacgttgattgtgaaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagata |
16070105 |
T |
|
| Q |
361 |
actgttctcctgaaaggaagtattctga |
388 |
Q |
| |
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||| ||||| |||||| ||||||||||| |
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| T |
16070104 |
actattctcttgaaagaaagtattctga |
16070077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 16070468 - 16070390
Alignment:
| Q |
18 |
agatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtcta |
96 |
Q |
| |
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||||| ||||| ||||||| |||||||||||||||| |||||||| | |||||||||||||||||||||| |||||||| |
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| T |
16070468 |
agataagaaggtagagaaaacaatggtttggcagaactcatgggggttttctactcgaactgtaagctttcaatgtcta |
16070390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 24 - 386
Target Start/End: Original strand, 45355013 - 45355372
Alignment:
| Q |
24 |
gaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctc |
123 |
Q |
| |
|
||||||||||||||||||||| |||||||| || |||| |||| ||||||||||||||||||| ||| ||| | |||||||| || | | ||| || |
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| T |
45355013 |
gaagggagagaaagcaatggtctggcagaactcgtgggcctatagtactcgaactgtaagcttt-aatttcttcaatatacatgcattgcaatattggtc |
45355111 |
T |
|
| Q |
124 |
ttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaa |
223 |
Q |
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| | || ||||||||| | ||| | | |||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
45355112 |
taaa-tatgattgcattaacgtttctttgcgctttttcaacagattggggtgatggtgatggttcatggtgatgacaagggattggtgctgccacctaaa |
45355210 |
T |
|
| Q |
224 |
gtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtg |
323 |
Q |
| |
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|||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||| | |||| ||||||||||||||||||| | |
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| T |
45355211 |
gtagcatcagttcaagtcattgtgattcctgtgccttacaaagatgctgatactcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttgg |
45355310 |
T |
|
| Q |
324 |
aagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattct |
386 |
Q |
| |
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|||| | ||| |||||||||| |||| | ||||| |||| |||||||| | |||| |||||| |
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|
| T |
45355311 |
aagc-aggaattcgtgctgagtcagatgccagagacaactattctcctggatggaaatattct |
45355372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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