View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13612_low_14 (Length: 359)

Name: NF13612_low_14
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13612_low_14
NF13612_low_14
[»] chr8 (1 HSPs)
chr8 (2-359)||(15348884-15349241)
[»] chr4 (11 HSPs)
chr4 (35-301)||(48898796-48899065)
chr4 (263-359)||(48891440-48891536)
chr4 (91-199)||(7773620-7773722)
chr4 (3-66)||(45365924-45365987)
chr4 (161-204)||(48705238-48705281)
chr4 (161-204)||(48903120-48903163)
chr4 (161-204)||(49044045-49044088)
chr4 (161-199)||(48852851-48852889)
chr4 (174-204)||(48870713-48870743)
chr4 (174-204)||(48886399-48886429)
chr4 (171-205)||(50250637-50250671)
[»] chr6 (2 HSPs)
chr6 (88-143)||(21979420-21979475)
chr6 (161-199)||(21015994-21016032)


Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 2 - 359
Target Start/End: Complemental strand, 15349241 - 15348884
Alignment:
Q  2 ctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatcaccagcatcatgttcaaaatcatctggatgaggca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15349241 ctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatcaccagcatcatgttcaaaatcatctggaggaggca 15349142  T
Q  102 tctcaaacagtttcctttcgtttaaatcaaatgcaacaataaagttatcacgccaaggaaaatcacgatgaaaagccaaccaatgaatagccccattata 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349141 tctcaaacagtttcctttcgtttaaatcaaatgcaacaataaagttatcacgccaaggaaaatcacgatgaaaagccaaccaatgaatagccccattata 15349042  T
Q  202 gagacaccctgctttgggcatctcatcaaaattactcctataagggcaataagggcagtccatttccttccacacattatctctcaacgagaaaaactcc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349041 gagacaccctgctttgggcatctcatcaaaattactcctataagggcaataagggcagtccatttccttccacacattatctctcaacgagaaaaactcc 15348942  T
Q  302 gaacacgaataaatattatctaaggtgggatcataggacattaaaaccaccaagtaat 359  Q
     |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15348941 aaacacgaataaatattatctaaggcgggatcataggacattaaaaccaccaagtaat 15348884  T

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Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 35 - 301
Target Start/End: Complemental strand, 48899065 - 48898796
Alignment:
Q  35 aaaaattcgccaaagacccacaaaccacaatcaccagcatcatgttcaaaatcatctggatgaggcatctcaaacagtttcctttcgtttaaatcaaatg 134  Q
    ||||| || |||||||||||||||||||||||   || |  |||||| |||||||||||| ||| |||||| ||||||||||||||  |||||||||| |    
T  48899065 aaaaaatctccaaagacccacaaaccacaatcctgaggaatatgttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaagg 48898966  T
Q  135 caacaataaagttatcacgccaagga---aaatcacgatgaaaagccaaccaatgaatagccccattatagagacaccctgctttgggcatctcatcaaa 231  Q
    ||||||| |  ||||||  ||| |||   ||||||||||||||||||||||||||||||||||||||||||||  ||||||| | |||  | |||| |||    
T  48898965 caacaatgacattatcataccatggatggaaatcacgatgaaaagccaaccaatgaatagccccattatagagtgaccctgcatggggattatcattaaa 48898866  T
Q  232 attactcctataagggcaataagggcagtccatttccttccacacattatctctcaacgagaaaaactcc 301  Q
      ||||  |||||||||| | || ||| || |||||||||||||||||||||||||| ||||||||||||    
T  48898865 ggtacttgtataagggcattgagtgcactcaatttccttccacacattatctctcaatgagaaaaactcc 48898796  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 359
Target Start/End: Complemental strand, 48891536 - 48891440
Alignment:
Q  263 atttccttccacacattatctctcaacgagaaaaactccgaacacgaataaatattatctaaggtgggatcataggacattaaaaccaccaagtaat 359  Q
    ||||| ||||||| |||||||||||| |||||||||||| ||| || || | ||  ||||||||| | ||||||||||| | |||||||||| ||||    
T  48891536 atttctttccacatattatctctcaatgagaaaaactccaaacgcggatgattaccatctaaggttgtatcataggacactgaaaccaccaactaat 48891440  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 7773620 - 7773722
Alignment:
Q  91 tggatgaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataaagttatcacgccaaggaaaatcacgatgaaaagccaaccaatgaata 190  Q
    |||| ||||||||||||||| |||||||||  |||||||||| | |||||| |  ||      |||| | ||||||||| | ||||||||||||||||||    
T  7773620 tggaagaggcatctcaaacaatttcctttccattaaatcaaaggaaacaattacatt------ccaacgtaaatcacgacgcaaagccaaccaatgaata 7773713  T
Q  191 gccccatta 199  Q
    |||||||||    
T  7773714 gccccatta 7773722  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 45365924 - 45365987
Alignment:
Q  3 tatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatc 66  Q
    ||||||||  ||||||| ||| ||||| ||| |||||||| ||||| |||||||||||||||||    
T  45365924 tatcattatcataatccatagcccaaaaactgaaaaattctccaaatacccacaaaccacaatc 45365987  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 48705238 - 48705281
Alignment:
Q  161 aaatcacgatgaaaagccaaccaatgaatagccccattatagag 204  Q
    |||||| || || |||||||||||||||||||||||||||||||    
T  48705238 aaatcatgacgataagccaaccaatgaatagccccattatagag 48705281  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 48903163 - 48903120
Alignment:
Q  161 aaatcacgatgaaaagccaaccaatgaatagccccattatagag 204  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||    
T  48903163 aaatcatgatgaaaagccaactaatgaatagccccattaaagag 48903120  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 49044045 - 49044088
Alignment:
Q  161 aaatcacgatgaaaagccaaccaatgaatagccccattatagag 204  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||    
T  49044045 aaatcaagatgaaaagccaaccagtgaatagccccattaaagag 49044088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 48852889 - 48852851
Alignment:
Q  161 aaatcacgatgaaaagccaaccaatgaatagccccatta 199  Q
    |||||| || |||||||||||||||||||||||||||||    
T  48852889 aaatcatgacgaaaagccaaccaatgaatagccccatta 48852851  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 48870743 - 48870713
Alignment:
Q  174 aagccaaccaatgaatagccccattatagag 204  Q
    |||||||||||||||||||||||||||||||    
T  48870743 aagccaaccaatgaatagccccattatagag 48870713  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 48886429 - 48886399
Alignment:
Q  174 aagccaaccaatgaatagccccattatagag 204  Q
    |||||||||||||||||||||||||||||||    
T  48886429 aagccaaccaatgaatagccccattatagag 48886399  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 50250637 - 50250671
Alignment:
Q  171 gaaaagccaaccaatgaatagccccattatagaga 205  Q
    ||||||||||||||||||||||||||||| |||||    
T  50250637 gaaaagccaaccaatgaatagccccattaaagaga 50250671  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 21979420 - 21979475
Alignment:
Q  88 atctggatgaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataa 143  Q
    ||||||| |||| |||||||| |||||||||||  |||||||||| ||||||||||    
T  21979420 atctggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaataa 21979475  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 21016032 - 21015994
Alignment:
Q  161 aaatcacgatgaaaagccaaccaatgaatagccccatta 199  Q
    |||||| || |||||||||||||||||||||||||||||    
T  21016032 aaatcatgacgaaaagccaaccaatgaatagccccatta 21015994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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