View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13612_low_15 (Length: 343)
Name: NF13612_low_15
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 103 - 324
Target Start/End: Complemental strand, 34203535 - 34203312
Alignment:
| Q |
103 |
aactgttaattttagaaattactctaaaatcaatcaactaacttatctgctataagatagcttatcatctatttcttannnnnnnnnnn--aataaaaag |
200 |
Q |
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| T |
34203535 |
aactgttaattttaaaaattactctaaaatcaatcaactaacttatctgctataagatagcttatcatctatttattttttatttttttttaataaaaag |
34203436 |
T |
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| Q |
201 |
agcctaagtgcatatttattcccctcttaatctgattgccctattactcaaaggaccaaaacgtgatattgaaatgagaaacaaacttagccaggagaag |
300 |
Q |
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| T |
34203435 |
agcctaagtgcatatttattccactcttaatctgattgccctattactcaaaggaccaaaacgtgatattgaaatgagaaacaaacttagccaggagaag |
34203336 |
T |
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| Q |
301 |
tggaactataagatataaagaatt |
324 |
Q |
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| T |
34203335 |
tggaactataagatataaagaatt |
34203312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 34203733 - 34203648
Alignment:
| Q |
17 |
atgaatattacgtatctaatcttaattaataacaaggatcttaagaatattcacttttaatgtaaatcagttttacagtgaaatgt |
102 |
Q |
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| T |
34203733 |
atgaatattacgtatctaatcttaattaataacaaggatcttaagaatattcacttttaatgtaaatcagttttacagtgaaatgt |
34203648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 9198055 - 9198013
Alignment:
| Q |
132 |
tcaatcaactaacttatctgctataagatagcttatcatctat |
174 |
Q |
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| T |
9198055 |
tcaatcaactaacttatccgctataagttagcttatcagctat |
9198013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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