View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13612_low_16 (Length: 323)
Name: NF13612_low_16
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_low_16 |
 | |
|
| [»] scaffold1029 (1 HSPs) |
| | |
|
| [»] scaffold1033 (1 HSPs) |
| | |
|
| [»] scaffold0889 (1 HSPs) |
| | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1029 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 35 - 304
Target Start/End: Original strand, 3034 - 3303
Alignment:
| Q |
35 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3034 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
3133 |
T |
|
| Q |
135 |
acagctgttcaaatttaaaatattttatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatattta |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3134 |
acagctgttcaaatttaaaatattttatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatattta |
3233 |
T |
|
| Q |
235 |
agcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttatttgattgatattatcca |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
3234 |
agcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttatttgattgatattatcca |
3303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 35 - 271
Target Start/End: Original strand, 3034 - 3270
Alignment:
| Q |
35 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3034 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
3133 |
T |
|
| Q |
135 |
acagctgttcaaatttaaaatattttatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatattta |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3134 |
acagctgttcaaatttaaaatattttatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatattta |
3233 |
T |
|
| Q |
235 |
agcaagtttataagaaacttgttaaaatcgaagatcc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3234 |
agcaagtttataagaaacttgttaaaatcgaagatcc |
3270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 35 - 304
Target Start/End: Complemental strand, 28580474 - 28580206
Alignment:
| Q |
35 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28580474 |
aatatccccagctataaacactgaatcaagtctgttttatt-----atcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
28580380 |
T |
|
| Q |
135 |
acagctgttc-aaatttaaaatat---tttatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgata |
230 |
Q |
| |
|
||| ||||| ||||||| ||||| |||||| ||| || ||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
28580379 |
acaattgttctaaatttagaatatctttttattgcaatgttctgatcaatctacacttttacattttcaggacgttacatatgtcaaacaagctttgata |
28580280 |
T |
|
| Q |
231 |
tttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttatttgattgatattatcca |
304 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
28580279 |
ttcaagcaagtttataagaaacttgttaaaatcgaagatccgatggaaagtttttatttgattgatattatcca |
28580206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 35 - 304
Target Start/End: Complemental strand, 26316478 - 26316211
Alignment:
| Q |
35 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
134 |
Q |
| |
|
||||||| || | |||||||||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26316478 |
aatatcctcaaccataaacactgaatcaagtttgtttta-----ctatcaaatcattaatttatagaatggtaagtattttaattgaagtacaaatatat |
26316384 |
T |
|
| Q |
135 |
acagctgttcaa-atttaaaatat--tttatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatat |
231 |
Q |
| |
|
| || ||||| | ||||| ||||| |||||||||| || || |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26316383 |
aaagttgttctagatttacaatatattttatttcaatgttctcatcattctgcacttttacattttcaggatgttacatatgtcaaacaagctttgatat |
26316284 |
T |
|
| Q |
232 |
ttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttatttgattgatattatcca |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
26316283 |
ttaagcaagtttataagaaacttgttaaaatcgaatatccgatggagagtttttatttgatcgatatcatcca |
26316211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 63 - 304
Target Start/End: Complemental strand, 28568566 - 28568313
Alignment:
| Q |
63 |
agtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatatacagctgttc-aaattta--------aa |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| | |
|
|
| T |
28568566 |
agtctgttttaatttactatcaaagcattaatttctagaatggtaagtattttaattgaagtacgaatatatacagctattctaaatttagttacaacat |
28568467 |
T |
|
| Q |
154 |
atat---tttatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaa |
250 |
Q |
| |
|
|||| |||||||||| | |||||||||||||||| ||||| ||| |||||| | |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28568466 |
atatagctttatttcaatattctgatcaatctgcactcttacaattttaggatgttgtatatgtcaaacaagctttaatatttaagcaagtttataagaa |
28568367 |
T |
|
| Q |
251 |
acttgttaaaatcgaagatcccatggagagtttttatttgattgatattatcca |
304 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
28568366 |
acttgttaaaatcgaagatccgatggagagtttttatttgatggatattatcca |
28568313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 38 - 304
Target Start/End: Complemental strand, 28575422 - 28575153
Alignment:
| Q |
38 |
atccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatataca |
137 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28575422 |
atccccagctataaacaccgaatcaagtctgttttatt-----atcaaagcattaatttctagaatggtaagtattttaactgaagtacaaatatataca |
28575328 |
T |
|
| Q |
138 |
gctgttcaaat-----ttaaaatat---tttatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgat |
229 |
Q |
| |
|
| | ||| || ||| || || |||||||||| || |||||||||||||||||| || ||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
28575327 |
gttattctaaacttagttacaacatagctttatttcaatgttctgatcaatctgcactttgactttttcaggatgttacatatgttaagcaagctttgat |
28575228 |
T |
|
| Q |
230 |
atttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttatttgattgatattatcca |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||| ||||| |
|
|
| T |
28575227 |
atttaagcaagtttataagaaacttgttaaaatcgaagattcgatggagagtttttatttgatcgatatcatcca |
28575153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 42 - 304
Target Start/End: Complemental strand, 28586611 - 28586363
Alignment:
| Q |
42 |
ccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat-acagct |
140 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| | ||| | || |
|
|
| T |
28586611 |
ccagttataaacactgaatcaagtctgtttta-----ctatcaaagcattaatttccagaatggtaagtaatttaattggagtacagttgtatcaaag-- |
28586519 |
T |
|
| Q |
141 |
gttcaaatttaaaatattttatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaag |
240 |
Q |
| |
|
|||| || ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28586518 |
----aaatgtat----ttttatttcaatattctgatcaatctgcacttttacattttcaggatgttacatatgtcaaacaagctttgatatttaagcaag |
28586427 |
T |
|
| Q |
241 |
tttataagaaacttgttaaaatcgaagatcccatggagagtttttatttgattgatattatcca |
304 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
28586426 |
tttataagaaacttgttaaaattgaagatccgatggaaagtttttatttgatcgatattatcca |
28586363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 304
Target Start/End: Complemental strand, 20618671 - 20618557
Alignment:
| Q |
190 |
tacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttattt |
289 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| | |||||||||| | ||||||||||||| | |||||||| | |||| |||| |||| |
|
|
| T |
20618671 |
tacattttcaggatgctatttatgtcaagcaagctttgatgtgtaagcaagttcacaagaaacttgttactagtgaagatccaactgagaattttcattt |
20618572 |
T |
|
| Q |
290 |
gattgatattatcca |
304 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
20618571 |
gattgacatcatcca |
20618557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 35 - 304
Target Start/End: Complemental strand, 24072094 - 24071834
Alignment:
| Q |
35 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagtattttaattgaagtacaaatatat |
134 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
24072094 |
aatatctccaactataaacattgaatcaagtctgtttta-----ctatcaaagcattaatttccagaatggtaagtattttaataga----------tat |
24072010 |
T |
|
| Q |
135 |
acagctgttca-aatttaaaatattt-----tatttcaaagtactgatcaatctgcacttttacattttcaggatgctacatatgtcaaacaagctttga |
228 |
Q |
| |
|
||| ||||| |||||| ||||| | ||||| || || ||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
24072009 |
acatatgttctgaatttacaatatatattcatattttaatgttctgatcaatatgcacttttacattttcaggatgttacttatgtcaaacaagctttga |
24071910 |
T |
|
| Q |
229 |
tatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttatttgattgatattatcca |
304 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||| |
|
|
| T |
24071909 |
tatttaagcaagtttatgagaaacttgttaaaatcgaagatccgatggagtgtttttatttgatcgatatcatcca |
24071834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 99 - 304
Target Start/End: Original strand, 4358 - 4572
Alignment:
| Q |
99 |
agaatggtaagtattttaattgaagtacaaatatatacagctgttc-aaattta------aaatatttt----atttcaaagtactgatcaatctgcact |
187 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| | ||| ||||||| | ||| ||| ||||||| || ||||||||| ||||| |
|
|
| T |
4358 |
agaatggtaagtattttaattgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcaatgttctgatcaat--gcact |
4455 |
T |
|
| Q |
188 |
tttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttat |
287 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4456 |
tttacatttttaggatgttttatatgtcaaacaagctttgatatttaagaaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttat |
4555 |
T |
|
| Q |
288 |
ttgattgatattatcca |
304 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
4556 |
ttgatcgatattatcca |
4572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 99 - 304
Target Start/End: Original strand, 4562 - 4776
Alignment:
| Q |
99 |
agaatggtaagtattttaattgaagtacaaatatatacagctgttc-aaattta------aaatatttt----atttcaaagtactgatcaatctgcact |
187 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| | ||| ||||||| | ||| ||| ||||||| || ||||||||| ||||| |
|
|
| T |
4562 |
agaatggtaagtattttaattgaaataccaatatatacagttattctaaatttatttacaacatagttttataatttcaatgttctgatcaat--gcact |
4659 |
T |
|
| Q |
188 |
tttacattttcaggatgctacatatgtcaaacaagctttgatatttaagcaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttat |
287 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4660 |
tttacatttttaggatgttttatatgtcaaacaagctttgatatttaagaaagtttataagaaacttgttaaaatcgaagatcccatggagagtttttat |
4759 |
T |
|
| Q |
288 |
ttgattgatattatcca |
304 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
4760 |
ttgatcgatattatcca |
4776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 34812926 - 34812997
Alignment:
| Q |
35 |
aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagta |
111 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||||||||||| | |||||||||||||||| ||||||||| |||| |
|
|
| T |
34812926 |
aatatctccacctataaacaccgaatcaagtctgttttatt-----atcaaagcattaattttcagaatggttagta |
34812997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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