View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13612_low_21 (Length: 284)
Name: NF13612_low_21
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 11468741 - 11468869
Alignment:
| Q |
12 |
aaacaacaggattaaaactgtaataaaactatgattttactaaatcatgtatcataatctacattttggtgggattcattaatttcgactaataatataa |
111 |
Q |
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| T |
11468741 |
aaacatcaggattaaaactgtaatgaaactatgattttactaaatcatgtatcctaatctacattttggtgggattcattaattttgactaataatataa |
11468840 |
T |
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| Q |
112 |
tgtacattgaaatataatgtacattgtcc |
140 |
Q |
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| T |
11468841 |
tgtacattgaaatataatgtacattgtcc |
11468869 |
T |
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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 17126450 - 17126499
Alignment:
| Q |
186 |
tctgctgctgcttgctttgtaaaagctcatcccaaagccatttttcctac |
235 |
Q |
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| T |
17126450 |
tctgctgctgcttgctttgtaaaagttcagccaaatgccatttttcctac |
17126499 |
T |
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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 21946120 - 21946214
Alignment:
| Q |
140 |
ccagtggcacaggcaccacctagctaggctgggctgtagctcaagctctgctgctgcttgctttgtaaaagctcatcccaaagccatttttcctac |
235 |
Q |
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| T |
21946120 |
ccagtggcgcaggcaccacccagctaggttgggctgtagcccaggctctgctgctgcttgctttgtaaaag-tcagccaaatgccatttttcctac |
21946214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 2966721 - 2966807
Alignment:
| Q |
149 |
caggcaccacctagctaggctgggctgtagctcaagctctgctgctgcttgctttgtaaaagctcatcccaaagccatttttcctac |
235 |
Q |
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| T |
2966721 |
caggcaacacccagctaggctgggctatagcccaggctctgctgctgcttgctttgtaaaagcccagcccaatgtcattttttctac |
2966807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 19398965 - 19399059
Alignment:
| Q |
141 |
cagtggcacaggcaccacctagctaggctgggctgtagctcaagctctgctgctgcttgctttgtaaaagctcatcccaaagccatttttcctac |
235 |
Q |
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| T |
19398965 |
cagtggcgcaggcaccatccagctaggctaggctgtagcccaggctctgctgctgcttgctttgtaaaagcccagccaaatgccatttttcctac |
19399059 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 51409219 - 51409140
Alignment:
| Q |
153 |
caccacctagctaggctgggctgtagctcaagctctgctgctgcttgctttgtaaaagctcatcccaaagccatttttcctac |
235 |
Q |
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| T |
51409219 |
caccacccagctaggctgggctgtagcccaggctctgctgct---tgctttgtaaaagcccagcccaatgccatttttcctac |
51409140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 24911212 - 24911146
Alignment:
| Q |
143 |
gtggcacaggcaccacctagctaggctgggctgtagctcaagctctgctgctgcttgctttgtaaaa |
209 |
Q |
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| T |
24911212 |
gtggcgcaggcaccaccgagctgggttgggctgtagcccaggctctgctgctgcttgctttgtaaaa |
24911146 |
T |
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