View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13612_low_22 (Length: 281)
Name: NF13612_low_22
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 19106771 - 19106516
Alignment:
| Q |
7 |
tggaggattcaaatcaacctcgttaacttctttcaagacttcttcacttgaatcacagggtttcgaaacttttgtcttctcatccaacttggtattttca |
106 |
Q |
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| T |
19106771 |
tggaggattcaaatcaacctcgttaacttctttcaagacttcttcacttgaatcgcagggtttcgaaacttttgtcttctcatccaacttggtattttca |
19106672 |
T |
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| Q |
107 |
ctgcctttagcacttgattcttcaaaactatcctccatctaatcagcctgtagctggagtgattctatgacacccatcatttctctattaacctattaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19106671 |
ctgcctttagcacttgattcttcaaaactatcctccatctaatcagcctgtagctggagtgattctatgacacccatcatttctctattaacctgttaaa |
19106572 |
T |
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| Q |
207 |
aacagaagtaatcaaaataagacctatgtatagaaagaaaggacttttaaggatac |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
19106571 |
aacagaagtaatcaaaataagacctatgtatagaaagacaagacttttaaggatac |
19106516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 43196978 - 43196754
Alignment:
| Q |
7 |
tggaggattcaaatcaacctcgttaacttctttcaagacttcttcacttgaatcacagggtttcgaaacttttgtcttctcatccaacttggtattttca |
106 |
Q |
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||||||||||| |||| || ||||| ||| |||||||||| |||||||||||||||||| || ||||| | |||| ||||||| |||| ||||||| |
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| T |
43196978 |
tggaggattcagatcattcttgttaatttccttcaagactttttcacttgaatcacagggctttgaaacctccgtctcctcatccggcttgagattttca |
43196879 |
T |
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| Q |
107 |
ctgcctttagcacttgattcttcaaaactatcctccatctaatcagcctgtagctggagtgattctatgacacccatcatttctctattaacctattaaa |
206 |
Q |
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| T |
43196878 |
tcactttttacacttgattcttcagaactctcctccatctgttcagcctgttgctggagtgattctatgacacccatcatttccctgtttacctattaag |
43196779 |
T |
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| Q |
207 |
aacagaagtaatcaaaataagacct |
231 |
Q |
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| T |
43196778 |
aacagaaataagcaaagtaagacct |
43196754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 43190797 - 43190855
Alignment:
| Q |
149 |
tcagcctgtagctggagtgattctatgacacccatcatttctctattaacctattaaaa |
207 |
Q |
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| T |
43190797 |
tcagcctgtcgctggagtgtttctatcacacccatcatttccctgttaacctgttaaaa |
43190855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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