View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13612_low_23 (Length: 241)
Name: NF13612_low_23
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_low_23 |
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| [»] scaffold0870 (1 HSPs) |
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| [»] scaffold0889 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 28568296 - 28568077
Alignment:
| Q |
5 |
cactactttgctgaggagatcaaagtggctcttgaaaagctacatttgatattaaacaccaatcctataattgattttgtgagtagccatgaactctatg |
104 |
Q |
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||||| ||||||||||| || ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28568296 |
cactattttgctgaggaaataaaagtggctcttgaaaatctgcatttgatattgaacaccaatcctataattgattttgtgagtagccatgaactctatg |
28568197 |
T |
|
| Q |
105 |
aagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaatacagatcctctccacatttgaatatatatatttag |
204 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
28568196 |
aagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaatacagatcctctccaaaattgaatatatatatttag |
28568097 |
T |
|
| Q |
205 |
taatataatgactaactata |
224 |
Q |
| |
|
||||| |||||||||||||| |
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| T |
28568096 |
taataaaatgactaactata |
28568077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 28580193 - 28580000
Alignment:
| Q |
1 |
tgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttgatattaaacaccaatcctataattgattttgtgagtagccatgaactc |
100 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||||| ||||||||||||||| |
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| T |
28580193 |
tgaacactactttaccgaggagatcaaagtggctcttgaaaaactacatttgatattgaacaacaatcctat---tgattttgtaagtagccatgaactc |
28580097 |
T |
|
| Q |
101 |
tatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaatacagatcctctccacatttgaatatata |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||| |
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| T |
28580096 |
tatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggttagtttaatacgtaccctctccacatttgaatatata |
28580000 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 28586350 - 28586185
Alignment:
| Q |
1 |
tgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttgatattaaacaccaatcctataattgattttgtgagtagccatgaactc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | ||||||||||| ||||||||||||| || |
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| T |
28586350 |
tgaacactattttgctgaggagatcaaagtggctcttgaaaagctacatttgacattgaacaccaattc---aattgattttgcgagtagccatgaaatc |
28586254 |
T |
|
| Q |
101 |
tatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaat |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28586253 |
tatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaat |
28586185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 28575140 - 28574951
Alignment:
| Q |
1 |
tgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttgatattaaacaccaatcctataattgattttgtgagtagccatgaactc |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |
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| T |
28575140 |
tgaacactattttgctgaggagatcaaagtggctcttgaaaagctacatttgatattgaacaccaatcctat---tgattttgtgaatagccatgaactc |
28575044 |
T |
|
| Q |
101 |
tatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaatacagatcctctccacatttgaata |
193 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||| || || |||||||||| ||||||| | | |||||| ||||||||||| |
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| T |
28575043 |
tatgaattttcacttgcattccgcttgctgagacaaggaggccactatgtcaatgcaggttagtttaattcgtaccctctctacatttgaata |
28574951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 26316198 - 26316004
Alignment:
| Q |
1 |
tgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttgatattaaacaccaatcctataattgattttgtgagtagccatgaactc |
100 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||| |||||| ||| |||||| ||||||||||||| ||||||| |||||| |||||||||| |
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| T |
26316198 |
tgaacactactttgttgaagagatcaaagtggctcttgagaagctatattcgatattgaacaccaatcctaa---tgattttatgagtatccatgaactc |
26316102 |
T |
|
| Q |
101 |
tatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaatacagatcctctccacatttgaatatatat |
198 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||| | |||||||||||||||||||||| |
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| T |
26316101 |
tacgaagttgcacttgcattccgcttgctcagacaaggaggacattatgtaaatgcaggttagtttaatacttacactctccacatttgaatatatat |
26316004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 20618544 - 20618387
Alignment:
| Q |
1 |
tgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttgatattaaacaccaatcctataattgattttgtgagtagccatgaactc |
100 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| || | | ||||||||| | || |||||| |||||||||||| ||||||||||||||| |
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| T |
20618544 |
tgaacactactttgttgaggaaatcaaagtggctcttgagaaacaatttttgatattgagcagcaatcc---aattgattttgttagtagccatgaactc |
20618448 |
T |
|
| Q |
101 |
tatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtt |
161 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||| |||| || |||||||||| |
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| T |
20618447 |
tatgaagttgcacttgcattccgtttgctcagacaaggaggctattatgtcaatgcaggtt |
20618387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 4789 - 4971
Alignment:
| Q |
1 |
tgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttgatattaaacaccaatcctataattgattttgtgagtagccatgaactc |
100 |
Q |
| |
|
||||||||| ||||||||||| || || |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4789 |
tgaacactattttgctgaggaaataaatgtggctcttgaaaatctgcatttgatattgaacaccaatcctataattgattttgtgagtagccatgaactc |
4888 |
T |
|
| Q |
101 |
tatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaatacagatcctctcca |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4889 |
tatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaatacagatcctctcca |
4971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 4585 - 4737
Alignment:
| Q |
1 |
tgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttgatattaaacaccaatcctataattgattttgtgagtagccatgaactc |
100 |
Q |
| |
|
||||||||| ||||||||||| || || |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4585 |
tgaacactattttgctgaggaaataaatgtggctcttgaaaatctgcatttgatattgaacaccaatcctataattgattttgtgagtagccatgaactc |
4684 |
T |
|
| Q |
101 |
tatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaa |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4685 |
tatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaa |
4737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 24071821 - 24071657
Alignment:
| Q |
1 |
tgaacactactttgctgaggagatcaaagtggctcttgaaaagctacatttgatattaaacaccaatcctataattgattttgtgagtagccatgaactc |
100 |
Q |
| |
|
|||||||||||||| ||| |||||||||| |||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
24071821 |
tgaacactactttgttgacgagatcaaagcggctcttgaaaacttgcatttgatattgaacaccaatcctat---tgattttgtgagtagccatgaactc |
24071725 |
T |
|
| Q |
101 |
tatgaagttgcacttgcattccgcttgctgagacaaggaggccattacgtaaatgcaggtttgtttaa |
168 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
24071724 |
tatcaagttgcacttgcattccgcttgctcagacaaggaggccattatgtaaatgcaggtatgtttaa |
24071657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 2600805 - 2600875
Alignment:
| Q |
74 |
attgattttgtgagtagccatgaactctatgaagttgcacttgcattccgcttgctgagacaaggaggcca |
144 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| ||| |||| |||||||| |||||||||||||| |
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|
| T |
2600805 |
attgattttgtccatagccatgaactccatgaagttgcgcttacatttcgcttgctaagacaaggaggcca |
2600875 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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