View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13612_low_27 (Length: 227)
Name: NF13612_low_27
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_low_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 35134476 - 35134703
Alignment:
| Q |
7 |
attgggccttagcttggtccattattccgcaattataataaatgtcaaaactctctgtcaagatatttaacattggtgtatttttaaagttgaatt---- |
102 |
Q |
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| T |
35134476 |
attgggccttagcttggtccattattccgcaactataatagatgtcaaaactctctgttaagatatttaacattgatgtatttttaaagttgaattcaaa |
35134575 |
T |
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| Q |
103 |
--caaatcaaaacgtttgtttaacgtataagagagttttatcatctcattctaatactcttggtgacgagactcgtatttgtttta-tttttctgataga |
199 |
Q |
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| T |
35134576 |
ttcaaatcaaaacgtttgtttaacgtataagagagatttatcatcttattctaatactcttggtgacgagactcgtatttgttttattttttctgataga |
35134675 |
T |
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| Q |
200 |
tgagtttatttcagttggtattattcac |
227 |
Q |
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| T |
35134676 |
cgagtttatttcagttggtattattcac |
35134703 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 34175154 - 34175116
Alignment:
| Q |
64 |
tcaagatatttaacattggtgtatttttaaagttgaatt |
102 |
Q |
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| T |
34175154 |
tcaagagatttaacattgctgtatttttaaagttgaatt |
34175116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 2047458 - 2047495
Alignment:
| Q |
71 |
atttaacattggtgtatttttaaagttgaattcaaatc |
108 |
Q |
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| T |
2047458 |
atttaacattgttgtatttttaaagttgaatttaaatc |
2047495 |
T |
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