View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13612_low_28 (Length: 207)
Name: NF13612_low_28
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 4e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 1636308 - 1636417
Alignment:
| Q |
81 |
gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaaaa |
180 |
Q |
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| T |
1636308 |
gagttcagatctgctccagttccaacttactccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaaca |
1636407 |
T |
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| Q |
181 |
tgttctcatt |
190 |
Q |
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|||||||||| |
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| T |
1636408 |
tgttctcatt |
1636417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 1637032 - 1636947
Alignment:
| Q |
81 |
gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaa |
166 |
Q |
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|||||||||||||||| ||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1637032 |
gagttcagatctgctctagttcaaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaattaatcaa |
1636947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 41827287 - 41827380
Alignment:
| Q |
81 |
gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaaaggtgcaga |
175 |
Q |
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| T |
41827287 |
gagttcagatctgctccatttccaacttgccttagttttcctgttc-tttgacagatgagcgacacgtgtcgaaacaattcatcaacggttcaga |
41827380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 12215916 - 12215807
Alignment:
| Q |
81 |
gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaaaa |
180 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
12215916 |
gagttcagatctgctccagttccaacttgctccacttttcctgttcttttgacggatgagcgacacgtggcaaaaaaattaatcaaaggtgcagagaaca |
12215817 |
T |
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| Q |
181 |
tgttctcatt |
190 |
Q |
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|||||||||| |
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| T |
12215816 |
tgttctcatt |
12215807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 12215194 - 12215279
Alignment:
| Q |
81 |
gagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaa |
166 |
Q |
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|||||||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12215194 |
gagttcagatttgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtggcaaaacaattaatcaa |
12215279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 28007822 - 28007925
Alignment:
| Q |
82 |
agttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaaaat |
181 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28007822 |
agttcagatctgctccagttccaacttgctccagttttcatgttcttttgacggatgagcgacacgtggcaaaacaattaatcaaaggtgcagagaacat |
28007921 |
T |
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| Q |
182 |
gttc |
185 |
Q |
| |
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|||| |
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| T |
28007922 |
gttc |
28007925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 28008546 - 28008460
Alignment:
| Q |
80 |
cgagttcagatctgctccagttccaacttgcttcagttttcctgttcttttgacgaatgagcgacacgtggcaaaacaattaatcaa |
166 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
28008546 |
cgagttcagatctgctccagttctaacttgctccagttttcctgttcttttgacggatgagcgacacgtgacaaaacaattaatcaa |
28008460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 40923883 - 40923815
Alignment:
| Q |
12 |
agaagcaaaggatgatggtggggatgtatatttctaccaatcaacccatccttcaacagtcagggattc |
80 |
Q |
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|||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
40923883 |
agaaacaaaggatgatggtggggatgtagatttctaccgatcaacccatccttcaacagtcagggattc |
40923815 |
T |
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