View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13612_low_3 (Length: 578)

Name: NF13612_low_3
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13612_low_3
NF13612_low_3
[»] chr8 (2 HSPs)
chr8 (61-572)||(3427967-3428478)
chr8 (20-62)||(3427902-3427944)
[»] chr5 (8 HSPs)
chr5 (63-205)||(9211459-9211606)
chr5 (63-205)||(9369879-9370026)
chr5 (24-59)||(19242401-19242436)
chr5 (26-59)||(9211398-9211431)
chr5 (26-59)||(12560227-12560260)
chr5 (25-57)||(12556985-12557017)
chr5 (63-107)||(12560154-12560198)
chr5 (63-107)||(19242464-19242508)
[»] chr3 (7 HSPs)
chr3 (24-59)||(20798780-20798815)
chr3 (26-59)||(9450789-9450822)
chr3 (26-59)||(17724638-17724671)
chr3 (26-59)||(19025867-19025900)
chr3 (26-59)||(28838410-28838443)
chr3 (23-59)||(26640805-26640841)
chr3 (27-59)||(28830446-28830478)
[»] chr7 (1 HSPs)
chr7 (26-59)||(19545433-19545466)
[»] chr1 (2 HSPs)
chr1 (26-59)||(1466862-1466895)
chr1 (26-59)||(35923325-35923358)


Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 61 - 572
Target Start/End: Original strand, 3427967 - 3428478
Alignment:
Q  61 aggtgcaatggaggtcacacgcctagacgatgggccttcttgatcacaacaccttccaggtaagtatgttgcaatgtgtcacacacttctattttataac 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  3427967 aggtgcaatggaggtcacacgcctagacgatgggccttcttgatcacaacacctgccaggtaagtatgctgcaatgtgtcacacacttctattttataac 3428066  T
Q  161 tcatgctccacattattcactacaaatcttccgatgtgggacttatattatgacattctaaacaccattcaagtgtcagcagttcataccctagctcaca 260  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428067 tcatgctccacattattcactataaatcttccgatgtgggacttttattattacattctaaacaccattcaagtgtcagcagttcataccctagctcaca 3428166  T
Q  261 catttgctactccattagatccaaatagacagagcatgtttaatcatattgcagttgttgaatccgatattttttgttgaactgataatatgcgttacaa 360  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428167 catttgccactccattagatccaaatagacaaagtatgtttaatcatattgcagttgttgaatccgatattttttgttgaactgataatatgcgttacaa 3428266  T
Q  361 aggctatgaataaacttggtctcactgatgactaattttgtgtagaaaaacttcaaatgtcttactcaaaaagctcttgcagaaaccaattaaggaatgt 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428267 aggctatgaataaacttggtctcactgatgactaattttgtgtagaaaaacttcaaatgtcttactcaaaaagctcttgcagaaaccaattaaggaatgt 3428366  T
Q  461 ttttgctccttgatctcctaactttccctctattttctatttttctagaacagttatgtatatcatgtaaggaaaccttttctagtgccattactatacc 560  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428367 ttttgctccttgatctcctaactttccctatattttctatttttctagaacagttatgtatatcatgtaaggaaaccttttctagtgccattactatacc 3428466  T
Q  561 tatttttacttt 572  Q
    ||||||||||||    
T  3428467 tatttttacttt 3428478  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 3427902 - 3427944
Alignment:
Q  20 cctactgcaacaaattatgatgtaagctccaccacttgggcag 62  Q
    ||||||||||||||||| ||||||| |||||||||||||||||    
T  3427902 cctactgcaacaaattacgatgtaaactccaccacttgggcag 3427944  T

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Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 9211459 - 9211606
Alignment:
Q  63 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcaca-----acaccttccaggtaagtatgttgcaatgtgtcacacacttctattttat 157  Q
    |||||||| |||||||  |||||| | |||||||||| |||||||      || || |||||||||||||||| |||||| ||||||| |||| ||||||    
T  9211459 gtgcaatgaaggtcacttgcctaggccatgggccttcctgatcacccattgaccccatccaggtaagtatgttacaatgtatcacacaattctgttttat 9211558  T
Q  158 aactcatgctccacattattcactacaaatcttccgatgtgggactta 205  Q
    ||||||||||||| |  |||||||| ||| ||||||||||||||||||    
T  9211559 aactcatgctccataacattcactataaaacttccgatgtgggactta 9211606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 9370026 - 9369879
Alignment:
Q  63 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcaca-----acaccttccaggtaagtatgttgcaatgtgtcacacacttctattttat 157  Q
    |||||||| |||||||  |||||| | ||||||||| ||||||||      || || ||||||||||||||||||||||  ||||||| |||| ||||||    
T  9370026 gtgcaatgaaggtcacttgcctaggccatgggcctttttgatcacccattgaccccatccaggtaagtatgttgcaatgaatcacacaattctcttttat 9369927  T
Q  158 aactcatgctccacattattcactacaaatcttccgatgtgggactta 205  Q
    ||||||||||||| |  |||||||| ||| ||||||||||||||||||    
T  9369926 aactcatgctccataacattcactataaaacttccgatgtgggactta 9369879  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 19242401 - 19242436
Alignment:
Q  24 ctgcaacaaattatgatgtaagctccaccacttggg 59  Q
    |||||||||||||||||||| |||||||||||||||    
T  19242401 ctgcaacaaattatgatgtaggctccaccacttggg 19242436  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 9211398 - 9211431
Alignment:
Q  26 gcaacaaattatgatgtaagctccaccacttggg 59  Q
    |||||||||||||||||| |||||||||||||||    
T  9211398 gcaacaaattatgatgtaggctccaccacttggg 9211431  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 12560260 - 12560227
Alignment:
Q  26 gcaacaaattatgatgtaagctccaccacttggg 59  Q
    |||||||||||||||||| |||||||||||||||    
T  12560260 gcaacaaattatgatgtaggctccaccacttggg 12560227  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 12557017 - 12556985
Alignment:
Q  25 tgcaacaaattatgatgtaagctccaccacttg 57  Q
    ||||||||||||||||||| |||||||||||||    
T  12557017 tgcaacaaattatgatgtaggctccaccacttg 12556985  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 12560198 - 12560154
Alignment:
Q  63 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcac 107  Q
    ||||||||||||||||  |||||| | ||||||||||||||||||    
T  12560198 gtgcaatggaggtcacttgcctaggccatgggccttcttgatcac 12560154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 19242464 - 19242508
Alignment:
Q  63 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcac 107  Q
    ||||||||||||||||  |||||| | ||||||||||||||||||    
T  19242464 gtgcaatggaggtcacttgcctaggccatgggccttcttgatcac 19242508  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 20798780 - 20798815
Alignment:
Q  24 ctgcaacaaattatgatgtaagctccaccacttggg 59  Q
    |||||||||||||||||||| |||||||||||||||    
T  20798780 ctgcaacaaattatgatgtaggctccaccacttggg 20798815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 9450822 - 9450789
Alignment:
Q  26 gcaacaaattatgatgtaagctccaccacttggg 59  Q
    |||||||||||||||||| |||||||||||||||    
T  9450822 gcaacaaattatgatgtaggctccaccacttggg 9450789  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 17724671 - 17724638
Alignment:
Q  26 gcaacaaattatgatgtaagctccaccacttggg 59  Q
    |||||||||||||||||| |||||||||||||||    
T  17724671 gcaacaaattatgatgtaggctccaccacttggg 17724638  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 19025900 - 19025867
Alignment:
Q  26 gcaacaaattatgatgtaagctccaccacttggg 59  Q
    |||||||||||||||||| |||||||||||||||    
T  19025900 gcaacaaattatgatgtaggctccaccacttggg 19025867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 28838410 - 28838443
Alignment:
Q  26 gcaacaaattatgatgtaagctccaccacttggg 59  Q
    |||||||||||||||||| |||||||||||||||    
T  28838410 gcaacaaattatgatgtaggctccaccacttggg 28838443  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 26640841 - 26640805
Alignment:
Q  23 actgcaacaaattatgatgtaagctccaccacttggg 59  Q
    ||||||||||||||||||||| | |||||||||||||    
T  26640841 actgcaacaaattatgatgtaggttccaccacttggg 26640805  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 28830446 - 28830478
Alignment:
Q  27 caacaaattatgatgtaagctccaccacttggg 59  Q
    ||||||||||||||||| |||||||||||||||    
T  28830446 caacaaattatgatgtaggctccaccacttggg 28830478  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 19545433 - 19545466
Alignment:
Q  26 gcaacaaattatgatgtaagctccaccacttggg 59  Q
    |||||||||||||||||| |||||||||||||||    
T  19545433 gcaacaaattatgatgtaggctccaccacttggg 19545466  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 1466895 - 1466862
Alignment:
Q  26 gcaacaaattatgatgtaagctccaccacttggg 59  Q
    |||||||||||||||||| |||||||||||||||    
T  1466895 gcaacaaattatgatgtaggctccaccacttggg 1466862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 35923358 - 35923325
Alignment:
Q  26 gcaacaaattatgatgtaagctccaccacttggg 59  Q
    |||||||||||||||||| |||||||||||||||    
T  35923358 gcaacaaattatgatgtaggctccaccacttggg 35923325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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