View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13612_low_4 (Length: 574)
Name: NF13612_low_4
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Complemental strand, 53491767 - 53491223
Alignment:
| Q |
18 |
agatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagga |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491767 |
agatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagga |
53491668 |
T |
|
| Q |
118 |
ttcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491667 |
ttcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacct |
53491568 |
T |
|
| Q |
218 |
cctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgt |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491567 |
cctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgt |
53491468 |
T |
|
| Q |
318 |
tgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaagga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491467 |
tgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaagga |
53491368 |
T |
|
| Q |
418 |
ttgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgttta |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491367 |
ttgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgttta |
53491268 |
T |
|
| Q |
518 |
tgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53491267 |
tgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
53491223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Complemental strand, 53499360 - 53498819
Alignment:
| Q |
18 |
agatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagga |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53499360 |
agataagaagggagagaaagcaatggtttggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagaa |
53499261 |
T |
|
| Q |
118 |
ttcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacct |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
53499260 |
ctccttttatgtacgattgcatttatattttagtccgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacct |
53499161 |
T |
|
| Q |
218 |
cctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgt |
317 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499160 |
cctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgc |
53499061 |
T |
|
| Q |
318 |
tgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaagga |
417 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||| ||||||| ||||||||||||| |
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|
| T |
53499060 |
tgtgtgaagca-aaaatacgtgctgagttagattctagagatagctactctcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaagga |
53498962 |
T |
|
| Q |
418 |
ttgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgttta |
517 |
Q |
| |
|
|||||||| |||||| |||||||| |||||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| | || |
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| T |
53498961 |
ttgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctgttgttgctcttatattct--cacatgtcattttgcttctaccctgta |
53498864 |
T |
|
| Q |
518 |
tgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
562 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
53498863 |
tgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
53498819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 161 - 507
Target Start/End: Complemental strand, 16070303 - 16069958
Alignment:
| Q |
161 |
taacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcctt |
260 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgcctt |
16070204 |
T |
|
| Q |
261 |
acaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagata |
360 |
Q |
| |
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||||| | |||||| | |||||||| ||||| ||||||||||| | ||||| |||||| |||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
16070203 |
acaaaaacgttgattgtgaaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagata |
16070105 |
T |
|
| Q |
361 |
actgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatcta |
460 |
Q |
| |
|
||| ||||| |||||| ||||||||||| |||||| |||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||||||||||| | |
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|
| T |
16070104 |
actattctcttgaaagaaagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaa |
16070005 |
T |
|
| Q |
461 |
tgttgtcttgttgttgctcttatattcttacatatgtcattttgctt |
507 |
Q |
| |
|
|||||| | || |||| ||| ||||||| ||||||||||| ||||| |
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| T |
16070004 |
tgttgttatattattgcacttgtattctttcatatgtcattatgctt |
16069958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 16070468 - 16070390
Alignment:
| Q |
18 |
agatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtcta |
96 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||||| |||||||| | |||||||||||||||||||||| |||||||| |
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|
| T |
16070468 |
agataagaaggtagagaaaacaatggtttggcagaactcatgggggttttctactcgaactgtaagctttcaatgtcta |
16070390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
383 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
421 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||| |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 24 - 454
Target Start/End: Original strand, 45355013 - 45355440
Alignment:
| Q |
24 |
gaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctc |
123 |
Q |
| |
|
||||||||||||||||||||| |||||||| || |||| |||| ||||||||||||||||||| ||| ||| | |||||||| || | | ||| || |
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| T |
45355013 |
gaagggagagaaagcaatggtctggcagaactcgtgggcctatagtactcgaactgtaagcttt-aatttcttcaatatacatgcattgcaatattggtc |
45355111 |
T |
|
| Q |
124 |
ttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaa |
223 |
Q |
| |
|
| | || ||||||||| | ||| | | |||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
45355112 |
taaa-tatgattgcattaacgtttctttgcgctttttcaacagattggggtgatggtgatggttcatggtgatgacaagggattggtgctgccacctaaa |
45355210 |
T |
|
| Q |
224 |
gtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtg |
323 |
Q |
| |
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|||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||| | |||| ||||||||||||||||||| | |
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|
| T |
45355211 |
gtagcatcagttcaagtcattgtgattcctgtgccttacaaagatgctgatactcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttgg |
45355310 |
T |
|
| Q |
324 |
aagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaa |
423 |
Q |
| |
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|||| | ||| |||||||||| |||| | ||||| |||| |||||||| | |||| |||||| | |||||| |||||||||| |||||||||||||||| |
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|
| T |
45355311 |
aagc-aggaattcgtgctgagtcagatgccagagacaactattctcctggatggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaa |
45355409 |
T |
|
| Q |
424 |
ttgggccaaaggatttagtaaataagcaggt |
454 |
Q |
| |
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| ||||| |||||||||| |||||||||||| |
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|
| T |
45355410 |
tcgggcccaaggatttagcaaataagcaggt |
45355440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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