View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13612_low_5 (Length: 567)
Name: NF13612_low_5
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13612_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 222 - 559
Target Start/End: Complemental strand, 24421337 - 24421000
Alignment:
| Q |
222 |
taatgaagctgttgttgctacacctgcaaaaccaaagagacctcacaatgtgaagagactagcaagtgcagggttaaaagcagattcagttttacagcga |
321 |
Q |
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| T |
24421337 |
taatgaagctgttgttgctacacctgcaaaaccaaagagacctcacaatgtgaagagactagcaagtgcagggctaaaagcagattcagttttacagcga |
24421238 |
T |
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| Q |
322 |
aaaacggttagtcttaaggagttttatactttaggaccaaagctaggacaagggcaatttggaactacattcctttgtgtggagaaatctactgggaaag |
421 |
Q |
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| T |
24421237 |
aaaacggttagtcttaaggagttttatactttaggaccaaagctaggacaagggcaatttggaactacattcctttgtgtggagaaatctactgggaaag |
24421138 |
T |
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| Q |
422 |
agtatgcatgcaagtcaatcatgaagaggaagttgttgactgaagaggatgtggaagatgtgaggagagagattcagattatgcatcacttggctggcag |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24421137 |
agtatgcatgcaagtcaatcatgaagaggaagttgttgactgaagaggatgtggaagatgtgaggagagagattcagattatgcatcacttggctggcag |
24421038 |
T |
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| Q |
522 |
ttcgaatgtgatttcgattaaggaagcttctgatgatg |
559 |
Q |
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| T |
24421037 |
ttcgaatgtgatttcgattaaggaagcttctgaggatg |
24421000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 24421533 - 24421376
Alignment:
| Q |
14 |
catcatcacgcgcaacttttccaagtccatcttgctggtcacgttccaagaaagatagtgcacacaaaacaagtccaacaaaaccaaaagaatctgttca |
113 |
Q |
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| T |
24421533 |
catcatcacgtgcaacttttccaagtccatcttgctggtcacgttccaagaaagatagtgcacacaaaacaagtccaacaaaaccaaaagaatctgttca |
24421434 |
T |
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| Q |
114 |
aaacaatcctccaccggtaatgaaaatcgaaaaggaagatgaaaagccgccaccacag |
171 |
Q |
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| T |
24421433 |
aaacaatcctccaccggtaatgaaaatcgaaaaggaagatgaaaagccgccaccacag |
24421376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 43462533 - 43462597
Alignment:
| Q |
371 |
aagggcaatttggaactacattcctttgtgtggagaaatctactgggaaagagtatgcatgcaag |
435 |
Q |
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| T |
43462533 |
aaggggaatttggaactacttcactttgtttggagaaatcaaccgggaaaacgtatgcatgcaag |
43462597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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