View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13612_low_6 (Length: 547)

Name: NF13612_low_6
Description: NF13612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13612_low_6
NF13612_low_6
[»] chr1 (6 HSPs)
chr1 (13-529)||(7554363-7554879)
chr1 (63-333)||(29658800-29659070)
chr1 (272-337)||(19468333-19468398)
chr1 (194-336)||(9581193-9581335)
chr1 (66-207)||(29718953-29719094)
chr1 (194-337)||(9586761-9586904)
[»] chr5 (6 HSPs)
chr5 (63-204)||(41901568-41901709)
chr5 (44-183)||(32267381-32267520)
chr5 (74-204)||(41889587-41889717)
chr5 (194-330)||(41901376-41901512)
chr5 (194-309)||(32267597-32267712)
chr5 (66-107)||(17205527-17205568)
[»] chr8 (6 HSPs)
chr8 (65-204)||(27922435-27922574)
chr8 (65-204)||(18315306-18315445)
chr8 (124-182)||(32151287-32151345)
chr8 (197-304)||(34936027-34936134)
chr8 (65-183)||(17636455-17636572)
chr8 (65-170)||(28246360-28246465)
[»] chr3 (5 HSPs)
chr3 (44-183)||(51113835-51113974)
chr3 (65-204)||(13470765-13470904)
chr3 (65-204)||(51120926-51121065)
chr3 (65-183)||(51764494-51764612)
chr3 (200-294)||(1657378-1657472)
[»] chr2 (2 HSPs)
chr2 (43-183)||(45245139-45245279)
chr2 (65-191)||(1037710-1037836)
[»] chr6 (21 HSPs)
chr6 (42-204)||(9411259-9411421)
chr6 (72-204)||(6585270-6585402)
chr6 (199-401)||(9411482-9411681)
chr6 (43-183)||(6402765-6402905)
chr6 (44-191)||(7994228-7994375)
chr6 (43-204)||(14820598-14820759)
chr6 (65-168)||(6415893-6415996)
chr6 (66-200)||(19632367-19632501)
chr6 (66-191)||(6603248-6603373)
chr6 (65-190)||(11936322-11936447)
chr6 (65-190)||(11948302-11948427)
chr6 (65-204)||(14818309-14818448)
chr6 (65-204)||(6432088-6432227)
chr6 (65-183)||(7119084-7119202)
chr6 (43-108)||(6394769-6394834)
chr6 (196-312)||(7119284-7119397)
chr6 (65-183)||(7131562-7131680)
chr6 (196-312)||(7131762-7131875)
chr6 (251-369)||(19632615-19632733)
chr6 (436-472)||(9411716-9411752)
chr6 (196-314)||(10579593-10579708)
[»] chr4 (18 HSPs)
chr4 (65-179)||(546840-546954)
chr4 (65-191)||(55908774-55908900)
chr4 (124-190)||(1524533-1524599)
chr4 (43-204)||(1548457-1548618)
chr4 (20-204)||(1513440-1513621)
chr4 (25-204)||(8184063-8184242)
chr4 (66-204)||(640843-640981)
chr4 (63-204)||(7307785-7307926)
chr4 (196-314)||(1600546-1600664)
chr4 (65-182)||(558425-558542)
chr4 (240-329)||(8186930-8187019)
chr4 (65-114)||(53761892-53761941)
chr4 (71-143)||(1489455-1489527)
chr4 (125-204)||(553466-553545)
chr4 (121-204)||(570334-570417)
chr4 (65-204)||(12121490-12121629)
chr4 (65-107)||(553406-553448)
chr4 (43-107)||(1524613-1524677)
[»] scaffold0295 (1 HSPs)
scaffold0295 (65-191)||(670-796)
[»] chr7 (2 HSPs)
chr7 (42-179)||(15092209-15092346)
chr7 (66-179)||(10614521-10614634)
[»] scaffold0014 (1 HSPs)
scaffold0014 (196-252)||(88943-88999)


Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 13 - 529
Target Start/End: Original strand, 7554363 - 7554879
Alignment:
Q  13 aatattgccattcactttaccacaattctgcaaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554363 aatattgccattcactttaccacaattctgcaaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatca 7554462  T
Q  113 catcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaaatgtctaa 212  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7554463 catcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatatgataagttcaaatgtctaa 7554562  T
Q  213 tgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattgggaaagatggaagctaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554563 tgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattgggaaagatggaagctaa 7554662  T
Q  313 cactttgatgttttcatctcttaactgtaaactgtgacccaaacatagagactttaagttggggcttacaacaaaatccatcaaagaataagacttctcc 412  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7554663 gactttgatgttttcatctcttaactgtaaactgtgacccaaacatagagactttaagttggggcttacaacaaaatccatcaaagaataagaattctcc 7554762  T
Q  413 atattattttttgtgaaatatgtgtattccagtttaatctcactaagtgaaggatagttcttaatgagtgcaaacagcgttgcgaagtttcttgattcgt 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7554763 atattattttttgtgaaatatgtgtattccagtttaatctcactaagtgaaggatagttcttaacgagtgcaaacagcgttgcgaagtttcttgattcgt 7554862  T
Q  513 gatcggtaaaggataaa 529  Q
    |||||||||||||||||    
T  7554863 gatcggtaaaggataaa 7554879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 63 - 333
Target Start/End: Complemental strand, 29659070 - 29658800
Alignment:
Q  63 gcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcat 162  Q
    ||||||||||||  |||||||| || ||||| || |||||||||||   ||| | ||  ||||||| ||| ||||| |||| ||||||| |||| || ||    
T  29659070 gcgtgcagttttgaaccacatgttttactccattctctgtgacattcgtacaacattccagtaacaattgcaaaaggccacaacaactcgttgatatgat 29658971  T
Q  163 atagagtgcttcatcatcaacacttgtatacgataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtca 262  Q
    || |||||||| |||||||||  | ||||| || |||||||||||  |||| |||  ||| | | ||||||  ||| |||||  ||||| ||||| |||     
T  29658970 atggagtgctttatcatcaactttggtatatgacaagttcaaatgcttaatcttactacaacattttaaaacttgagaaatagtttcttcagatacgtcc 29658871  T
Q  263 tagcaatttttcaaatcaagcagctctaaattgggaaagatggaagctaacactttgatgttttcatctct 333  Q
    |  ||||   ||||||||||||  || || ||||| || |||||||| |||| | ||||||||| ||||||    
T  29658870 ttccaatagctcaaatcaagcacttccaagttggggaaaatggaagcaaacaatatgatgttttgatctct 29658800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 19468398 - 19468333
Alignment:
Q  272 ttcaaatcaagcagctctaaattgggaaagatggaagctaacactttgatgttttcatctcttaac 337  Q
    ||||||||||||||||  ||||||||||| |||||||| |||| | ||||||||||||| ||||||    
T  19468398 ttcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatcgcttaac 19468333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 336
Target Start/End: Original strand, 9581193 - 9581335
Alignment:
Q  194 gataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaat 293  Q
    |||| ||||||||||||||| | |  ||||||| ||||||  ||| ||||||||  ||||||||||| | ||||||    || |||||||||||  ||||    
T  9581193 gatatgttcaaatgtctaatctgacaacatctttttaaaacttgacaaatacctcttttagatatgttacagcaatggcgcagatcaagcagctgcaaat 9581292  T
Q  294 tgggaaagatggaagctaacactttgatgttttcatctcttaa 336  Q
    |||| || || ||||| |||| | ||||||||| |||||||||    
T  9581293 tggggaaaattgaagcaaacattatgatgtttttatctcttaa 9581335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 66 - 207
Target Start/End: Complemental strand, 29719094 - 29718953
Alignment:
Q  66 tgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatata 165  Q
    |||||||||  |||||||| |||||||| || |||||||||||   ||| | ||  ||||||| ||| ||||| |||| ||||||| |||| || ||||     
T  29719094 tgcagttttgaaccacatgtttcactccattctctgtgacattcatacaactttccagtaacaattgcaaaaggccacaacaactcgttgatatgatatg 29718995  T
Q  166 gagtgcttcatcatcaacacttgtatacgataagttcaaatg 207  Q
    ||||| || |||||||||  | ||||| || |||||||||||    
T  29718994 gagtgatttatcatcaacgttggtatatgacaagttcaaatg 29718953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 337
Target Start/End: Original strand, 9586761 - 9586904
Alignment:
Q  194 gataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaat 293  Q
    |||| ||||||||||||||| | |  |||||||  |||||  ||| ||||||||  ||||||||||| | ||||||    || |||||||||||  ||||    
T  9586761 gatatgttcaaatgtctaatctgacaacatctttgtaaaacttgacaaatacctcttttagatatgttacagcaatggcacagatcaagcagctgcaaat 9586860  T
Q  294 tgggaaagatggaagctaacactttgatgttttcatctcttaac 337  Q
    |||| || || ||||| |||| | ||||||||| ||||||||||    
T  9586861 tggggaaaattgaagcaaacattatgatgtttttatctcttaac 9586904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 41901709 - 41901568
Alignment:
Q  63 gcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcat 162  Q
    |||| ||||||||||||||||||||||||||||| | |||||||| || |||  ||| |||| ||| ||  |||||||||| ||||||||||||||||||    
T  41901709 gcgtacagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcat 41901610  T
Q  163 atagagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    ||| |||||||||||||||||  ||||||| || ||||||||    
T  41901609 ataaagtgcttcatcatcaacttttgtatatgacaagttcaa 41901568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 32267381 - 32267520
Alignment:
Q  44 aaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccac 143  Q
    |||||||||| | | ||| |||||||||||||||| ||||||||||||||||| | ||||| || || |||   ||||||| ||| ||  ||||| ||||    
T  32267381 aaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccac 32267480  T
Q  144 cacaactctttgagatcatatagagtgcttcatcatcaac 183  Q
     ||||||||||||||||||||| |||||||||||||||||    
T  32267481 aacaactctttgagatcatataaagtgcttcatcatcaac 32267520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 41889717 - 41889587
Alignment:
Q  74 tctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgctt 173  Q
    ||||||||||| ||||||||||| | |||||||| || |||   ||||||||||| ||   |||| || | |||||||||||||||| |||| |||| ||    
T  41889717 tctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgttt 41889618  T
Q  174 catcatcaacacttgtatacgataagttcaa 204  Q
    ||||||||||  ||||||| |||||||||||    
T  41889617 catcatcaacttttgtatatgataagttcaa 41889587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 330
Target Start/End: Complemental strand, 41901512 - 41901376
Alignment:
Q  194 gataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaat 293  Q
    ||||||||||||||||||||||||  |||  | |||||||  |||| ||||||||||| | |||||  | | |||||  |||||||||||||||  ||||    
T  41901512 gataagttcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatgcgacaacaattgctcaaatcaagcagctgcaaat 41901413  T
Q  294 tgggaaagatggaagctaacactttgatgttttcatc 330  Q
    |||| || |||||||| |||| | |||||| ||||||    
T  41901412 tggggaaaatggaagcgaacattgtgatgtcttcatc 41901376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 32267597 - 32267712
Alignment:
Q  194 gataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaat 293  Q
    ||||||||||||||||||||||||  |||| | |||||||  ||||  |||||||||| |||||||  | | |||||  |||||||||||||||  ||||    
T  32267597 gataagttcaaatgtctaatgttacaacatatccttaaaaattgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaat 32267696  T
Q  294 tgggaaagatggaagc 309  Q
    |||  |||||||||||    
T  32267697 tggagaagatggaagc 32267712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 17205527 - 17205568
Alignment:
Q  66 tgcagttttctaccacatgcttcactcccttttctgtgacat 107  Q
    ||||||||||||||||||| |||| ||| |||||||||||||    
T  17205527 tgcagttttctaccacatgtttcaatcctttttctgtgacat 17205568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 27922435 - 27922574
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    |||||||||||||||||||| ||||||||||| | ||||| || || |||   || |||| ||| ||  ||||| |||| ||||||||||||||||||||    
T  27922435 gtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactctttgagatcatat 27922534  T
Q  165 agagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    | |||||||||||||||||| ||||||| || ||||||||    
T  27922535 aaagtgcttcatcatcaacatttgtatatgacaagttcaa 27922574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 18315445 - 18315306
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    ||||||||||||||||||| |||  |||| || |||||||||| |  ||| | ||  | ||||||||| ||||| | || ||||||||||||||||| ||    
T  18315445 gtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactctttgagatcacat 18315346  T
Q  165 agagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    |||||||||||||||||||  ||||||  || ||||||||    
T  18315345 agagtgcttcatcatcaacttttgtatgtgacaagttcaa 18315306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 32151287 - 32151345
Alignment:
Q  124 taacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaa 182  Q
    ||||||||| ||||| |||| ||||||||||||||||| |||||||| |||||||||||    
T  32151287 taacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaa 32151345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 304
Target Start/End: Complemental strand, 34936134 - 34936027
Alignment:
Q  197 aagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattgg 296  Q
    |||| |||||||||||||| |  |||||| |||||||  ||| |||||||||  ||||||||| ||  |||||   ||||||||||||| |  |||||||    
T  34936134 aagtacaaatgtctaatgtcacaacatctccttaaaacatgataaataccttgattagatatgccactgcaatcgctcaaatcaagcagatgcaaattgg 34936035  T
Q  297 gaaagatg 304  Q
    ||||||||    
T  34936034 gaaagatg 34936027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 183
Target Start/End: Complemental strand, 17636572 - 17636455
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    ||||| ||||||| ||||||| ||||||| || || ||||||||| ||||   || |||| ||| ||| ||||||| |  ||||||||||||||||| ||    
T  17636572 gtgcaattttctagcacatgcctcactcctttctc-gtgacattaacacaatattcaagtgacaattgcaaaagtctaagacaactctttgagatcacat 17636474  T
Q  165 agagtgcttcatcatcaac 183  Q
    | | ||||||||| |||||    
T  17636473 acaatgcttcatcgtcaac 17636455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 170
Target Start/End: Complemental strand, 28246465 - 28246360
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    ||||| ||||| ||||||||| ||||||  || |||||||||   |||||   ||||||| ||||||| ||||| || | ||||||||||||||||  ||    
T  28246465 gtgcatttttcaaccacatgcgtcactcatttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccgctacaactctttgagatccaat 28246366  T
Q  165 agagtg 170  Q
    ||||||    
T  28246365 agagtg 28246360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 51113974 - 51113835
Alignment:
Q  44 aaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccac 143  Q
    |||||||||||| | |||   ||||| |||||||||||||||||||||||||| ||||||||||  | |||   ||| ||||||||||| ||||| ||||    
T  51113974 aaattaatctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccac 51113875  T
Q  144 cacaactctttgagatcatatagagtgcttcatcatcaac 183  Q
     ||||||||| ||||||| |||||||| ||||||||||||    
T  51113874 aacaactcttcgagatcacatagagtgtttcatcatcaac 51113835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 13470904 - 13470765
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||| |||   || |||||| ||||| ||||| |||| |||| |||||||||||||||    
T  13470904 gtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcatat 13470805  T
Q  165 agagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    |||||| || ||||| |||  ||||||  || ||||||||    
T  13470804 agagtgttttatcattaacctttgtatttgacaagttcaa 13470765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 51121065 - 51120926
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    |||||||||||||||||||| |||||||| |||| ||||||||    ||| | ||  ||  ||| ||| ||||| |||| ||||||||||||||| | ||    
T  51121065 gtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagattacat 51120966  T
Q  165 agagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    | |||  |||||||||||| ||||||| ||| ||||||||    
T  51120965 atagtttttcatcatcaactcttgtatgcgacaagttcaa 51120926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 65 - 183
Target Start/End: Complemental strand, 51764612 - 51764494
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    ||||||||||| |||||||| ||||||||||| ||  |||||||||||||   ||  ||||| ||||| ||||| || | |||| |||||||||||  ||    
T  51764612 gtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcat 51764513  T
Q  165 agagtgcttcatcatcaac 183  Q
    |||||| || |||||||||    
T  51764512 agagtgttttatcatcaac 51764494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 1657378 - 1657472
Alignment:
Q  200 ttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaatt 294  Q
    ||||||||||||||||||  |||| |  ||||||  |||| ||||||||||| ||||||||| | |||||   |||||||||| |||| ||||||    
T  1657378 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatatgtctttgcaatggctcaaatcaagtagctgtaaatt 1657472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 45245279 - 45245139
Alignment:
Q  43 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtcca 142  Q
    |||||| |||||| | ||| | ||||| |||||||||||||| ||||||||||| |||||||||| || ||||  ||| | ||| ||||| ||||| |||    
T  45245279 caaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca 45245180  T
Q  143 ccacaactctttgagatcatatagagtgcttcatcatcaac 183  Q
    | ||||||||||||||||| || ||||| ||||||||||||    
T  45245179 cgacaactctttgagatcacatggagtgtttcatcatcaac 45245139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 1037836 - 1037710
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    ||||||||||| || ||||| ||||| || || |||||||| | ||||||   ||  || |||||||||||||| |||| |||| |||||||||||||||    
T  1037836 gtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatcatat 1037737  T
Q  165 agagtgcttcatcatcaacacttgtat 191  Q
    |||||| |||||||||||||| |||||    
T  1037736 agagtgtttcatcatcaacacatgtat 1037710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 9411259 - 9411421
Alignment:
Q  42 gcaaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtcc 141  Q
    ||||||| |||||||||||| ||  ||| ||| ||||||||||| |||||||||| ||| ||||||||| ||| | ||  ||||||||||| ||||||||    
T  9411259 gcaaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtcc 9411358  T
Q  142 accacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    || |||| |||||||||||  |||||||  ||||||   ||||| |||||| || ||||||||    
T  9411359 acgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaa 9411421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 6585402 - 6585270
Alignment:
Q  72 tttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgc 171  Q
    ||||||||||||| |||| |||||| ||||||||||| ||||| ||||| ||||| ||||  |||||  ||  ||||||||||||||||| ||||||||     
T  6585402 tttctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgt 6585303  T
Q  172 ttcatcatcaacacttgtatacgataagttcaa 204  Q
    ||||||||||||  ||||||  || ||||||||    
T  6585302 ttcatcatcaacctttgtatctgacaagttcaa 6585270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 199 - 401
Target Start/End: Original strand, 9411482 - 9411681
Alignment:
Q  199 gttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattggga 298  Q
    |||||||||||||||||||  |||||| |||||||  || ||||||||||| |||||||||| | | ||     |||||||||||||||  ||||||||     
T  9411482 gttcaaatgtctaatgttaccacatctccttaaaacctgcaaaataccttcgttagatatgttacaacatccgctcaaatcaagcagctgcaaattgggg 9411581  T
Q  299 aagatggaagctaacactttgatgttttcatctcttaactgtaaactgtgacccaaacatagagactttaagttggggcttacaacaaaatccatcaaag 398  Q
    || |||||||| |||  ||||||||||| ||||||||||    || || || |||||| ||||||||| || | ||| |||||| |||||| ||||||||    
T  9411582 aaaatggaagcaaaccttttgatgtttttatctcttaac---caattgcgaaccaaacctagagacttcaattggggccttacagcaaaattcatcaaag 9411678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 6402765 - 6402905
Alignment:
Q  43 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtcca 142  Q
    ||||| ||||||| | ||| | || |||||||||| |||||| ||| ||||||||||||||||||||| |||  || | | ||| ||||  ||||| |||    
T  6402765 caaataaatctctctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagccca 6402864  T
Q  143 ccacaactctttgagatcatatagagtgcttcatcatcaac 183  Q
    | |||| |||||||||||| |||||||| ||||||||||||    
T  6402865 ctacaattctttgagatcacatagagtgtttcatcatcaac 6402905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 44 - 191
Target Start/End: Complemental strand, 7994375 - 7994228
Alignment:
Q  44 aaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccac 143  Q
    |||| ||||||||| ||| |||||||||||||||||||||| ||||||||||  || || |||| || |||   || |||||| ||||| |||||||||     
T  7994375 aaataaatctctttcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccag 7994276  T
Q  144 cacaactctttgagatcatatagagtgcttcatcatcaacacttgtat 191  Q
     |||| |||||||||||| ||| |||| ||| |||| ||| |||||||    
T  7994275 aacaattctttgagatcacatatagtgtttcgtcattaacccttgtat 7994228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 43 - 204
Target Start/End: Original strand, 14820598 - 14820759
Alignment:
Q  43 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtcca 142  Q
    ||||||||||||| | ||  | |||||||||| ||||||||| ||||| ||||| |||||||||| || ||||  || |||||| | | | ||||| |||    
T  14820598 caaattaatctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagccca 14820697  T
Q  143 ccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    | |||| |||| ||||||||||| |||| ||||| ||||||  ||||||  |||||||||||    
T  14820698 caacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaa 14820759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 6415893 - 6415996
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    |||||||| ||||||||||| |||||||||  ||||||||||||||||||   || |||||| ||||| ||||| || | |||| |||||||||||| ||    
T  6415893 gtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcacat 6415992  T
Q  165 agag 168  Q
    ||||    
T  6415993 agag 6415996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 200
Target Start/End: Original strand, 19632367 - 19632501
Alignment:
Q  66 tgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatata 165  Q
    |||||||||||||||| || ||||||||||| ||||||| |||| ||||   ||| ||||| ||||| ||||| |||| |||| |||||||||||| | |    
T  19632367 tgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatcacaaa 19632466  T
Q  166 gagtgcttcatcatcaacacttgtatacgataagt 200  Q
     |||   |||||||||||  |||||||||| ||||    
T  19632467 aagttgctcatcatcaacctttgtatacgacaagt 19632501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 191
Target Start/End: Complemental strand, 6603373 - 6603248
Alignment:
Q  66 tgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatata 165  Q
    ||||||||||||||||||| |||||||| || |||||||||| || |||   ||| | ||| ||||  ||||| |||  ||||||||||||||||  |||    
T  6603373 tgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactctttgagatcgcata 6603274  T
Q  166 gagtgcttcatcatcaacacttgtat 191  Q
    || || |||||||||||||| |||||    
T  6603273 gactgtttcatcatcaacacctgtat 6603248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 190
Target Start/End: Complemental strand, 11936447 - 11936322
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    ||||| ||||| ||||||||| ||||||| || |||||||||   |||||   ||||||| ||||||| ||||| |||| ||||||||||||||||  ||    
T  11936447 gtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccactacaactctttgagatccaat 11936348  T
Q  165 agagtgcttcatcatcaacacttgta 190  Q
    |||||| || ||| ||||| ||||||    
T  11936347 agagtgatttatcgtcaactcttgta 11936322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 190
Target Start/End: Complemental strand, 11948427 - 11948302
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    ||||| ||||| ||||||||| ||||||| || |||||||||   |||||   ||||||| ||||||| ||||| |||| ||||||||||||||||  ||    
T  11948427 gtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccactacaactctttgagatccaat 11948328  T
Q  165 agagtgcttcatcatcaacacttgta 190  Q
    |||||| || ||| ||||| ||||||    
T  11948327 agagtgatttatcgtcaactcttgta 11948302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 14818309 - 14818448
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    |||||||||||||| ||||| ||||| ||||| ||||||||||||| |||   || |||||| | | | ||||| |||  |||| |||| ||||||||||    
T  14818309 gtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattcttggagatcatat 14818408  T
Q  165 agagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    | |||| ||||| ||||||  ||||||  |||||||||||    
T  14818409 aaagtgtttcattatcaacctttgtatttgataagttcaa 14818448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 6432088 - 6432227
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    ||||| |||||||||||| | ||||||||||| | |||||||||||||||    |  || || ||||| | ||| |||| |||| ||||| |||||| ||    
T  6432088 gtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaattctttaagatcacat 6432187  T
Q  165 agagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    | |||| |||||||||||| |||||||  || ||||||||    
T  6432188 aaagtgtttcatcatcaacgcttgtatttgacaagttcaa 6432227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 7119084 - 7119202
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    |||||||||||| ||||||| |||||| | |||| |||||||| || |||  |||| ||||| ||||  ||||| || | |||| |||| ||||||| ||    
T  7119084 gtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacat 7119183  T
Q  165 agagtgcttcatcatcaac 183  Q
     ||||| ||||||||||||    
T  7119184 ggagtgtttcatcatcaac 7119202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 6394769 - 6394834
Alignment:
Q  43 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacatt 108  Q
    ||||||||||||| | | | | |||||||||||||||||||| | ||| |||||||||||||||||    
T  6394769 caaattaatctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatt 6394834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 7119284 - 7119397
Alignment:
Q  196 taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattg 295  Q
    ||||||||||||| |||| |||  |||||| |||||||  ||| ||||||||||   |||||||| || |||| | ||||||||||| || | |||||||    
T  7119284 taagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttc---agatatgttattgcaagtattcaaatcaagaagttgtaaattg 7119380  T
Q  296 ggaaagatggaagctaa 312  Q
    || || | |||||||||    
T  7119381 gggaaaaaggaagctaa 7119397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 7131562 - 7131680
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    |||||||||||| ||||||| |||||| | || | |||||||| || |||  |||| ||||| ||||  ||||| || | |||| |||| ||||||| ||    
T  7131562 gtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacat 7131661  T
Q  165 agagtgcttcatcatcaac 183  Q
     ||||| ||||||||||||    
T  7131662 ggagtgtttcatcatcaac 7131680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 7131762 - 7131875
Alignment:
Q  196 taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattg 295  Q
    ||||||||||||| |||| |||  |||||| |||||||  ||| ||||||||||   |||||||| || |||| | ||||||||||| || | |||||||    
T  7131762 taagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttc---agatatgttattgcaagtattcaaatcaagaagttgtaaattg 7131858  T
Q  296 ggaaagatggaagctaa 312  Q
    || || | |||||||||    
T  7131859 gggaaaaaggaagctaa 7131875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 369
Target Start/End: Original strand, 19632615 - 19632733
Alignment:
Q  251 ttagatatgtcatagcaatttttcaaatcaagcagctctaaattgggaaagatggaagctaacactttgatgttttcatctcttaactgtaaactgtgac 350  Q
    |||||||||| |||||||   |||||||||||| |||  ||||||||||| |  ||||| |||| | | || |||||||| |||||| ||||| |  |||    
T  19632615 ttagatatgtaatagcaacgattcaaatcaagccgctacaaattgggaaaaaacgaagcgaacattgtaatcttttcatcacttaaccgtaaatttcgac 19632714  T
Q  351 ccaaacatagagactttaa 369  Q
    ||||| | |||||||||||    
T  19632715 ccaaatagagagactttaa 19632733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 472
Target Start/End: Original strand, 9411716 - 9411752
Alignment:
Q  436 gtattccagtttaatctcactaagtgaaggatagttc 472  Q
    |||||||| |||||||||||||||| |||||||||||    
T  9411716 gtattccattttaatctcactaagtaaaggatagttc 9411752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 10579708 - 10579593
Alignment:
Q  196 taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattg 295  Q
    ||||||||||||  |||| |||  |||||||| | |||  ||||||||||||||   ||||||||  | |||| | ||||||||||||||||  ||||||    
T  10579708 taagttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttc---agatatgtattcgcaagtattcaaatcaagcagctgcaaattg 10579612  T
Q  296 ggaaagatggaagctaaca 314  Q
    || || | |||||||||||    
T  10579611 gggaaaaaggaagctaaca 10579593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 546840 - 546954
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    ||||||||||||| |||||| ||||||||||| |||||||||| |  |||| |||  ||||||| ||  ||||| |||| ||||||||||||||||| ||    
T  546840 gtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaacaactctttgagatcacat 546939  T
Q  165 agagtgcttcatcat 179  Q
    |||||| ||||||||    
T  546940 agagtgtttcatcat 546954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 55908900 - 55908774
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    ||||||||||| || ||||| ||||| || || |||||||| | ||||||   ||  || |||||||||||||| |||| |||| |||||||||||||||    
T  55908900 gtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatcatat 55908801  T
Q  165 agagtgcttcatcatcaacacttgtat 191  Q
    |||||| |||||||||||||| |||||    
T  55908800 agagtgtttcatcatcaacacatgtat 55908774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 1524599 - 1524533
Alignment:
Q  124 taacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgta 190  Q
    ||||||||| ||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||    
T  1524599 taacagttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgta 1524533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 1548618 - 1548457
Alignment:
Q  43 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtcca 142  Q
    ||||||||| ||| | ||| ||| |||||||||| | | ||| ||||||||||| ||||||| ||| | ||| | |||  ||||||  || ||||| |||    
T  1548618 caaattaatttctctcagttgcgagcagttttcttctatatgtttcactcccttctctgtgatatttttacaacgtttttgtaacaagtgcaaaagccca 1548519  T
Q  143 ccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    | ||||||||||||||||| || ||||| ||||||||||| ||||||||  || ||||||||    
T  1548518 caacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaa 1548457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 1513621 - 1513440
Alignment:
Q  20 ccattcactttaccacaattctgcaaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctt 119  Q
    ||||||||||||  |||||  | |||||| |||||| | ||| | ||||| ||||||| |||| ||||||||||| | ||||||||| ||   || ||||    
T  1513621 ccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcccatctctgtgacaata---caacctt 1513525  T
Q  120 taagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    | ||||  ||||| ||||| |||| ||||| ||||||||| |  ||||||| ||||||||||||| ||||| | || ||||||||    
T  1513524 tcagtatgagttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaa 1513440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 204
Target Start/End: Complemental strand, 8184242 - 8184063
Alignment:
Q  25 cactttaccacaattctgcaaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtga-cattatcacatcctttaag 123  Q
    ||||||| |||| |||  |||||| ||| |||| ||| | ||||| ||||||| |||||||||||||||||  ||||||| |||| |||||   ||  ||    
T  8184242 cactttatcacagttcctcaaattgatcactttcagttgtgtgcaattttctagcacatgcttcactccctcatctgtgatcatt-tcacaattttccag 8184144  T
Q  124 taacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    ||||||||  ||||| |||| |||||||||||||||   ||||||||||  ||||||||| |||||||  || ||||||||    
T  8184143 taacagttccaaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaa 8184063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 66 - 204
Target Start/End: Original strand, 640843 - 640981
Alignment:
Q  66 tgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatata 165  Q
    ||||||||||||||||||| ||||||||||| | ||| |||| || |||  |||  |||||||| || ||||| ||||  ||| |||||||| |||  ||    
T  640843 tgcagttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgta 640942  T
Q  166 gagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    ||||| ||||||||||||  ||||||  || ||||||||    
T  640943 gagtgtttcatcatcaacgtttgtatctgacaagttcaa 640981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 204
Target Start/End: Original strand, 7307785 - 7307926
Alignment:
Q  63 gcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcat 162  Q
    ||||||||||||||||||||||||||| |||  |    |||||| ||  ||| ||||  |||||||| || ||||| | || ||||||||||||||||||    
T  7307785 gcgtgcagttttctaccacatgcttcaatccagtcatcgtgacaataaaacaaccttccagtaacaggtgcaaaagcctacaacaactctttgagatcat 7307884  T
Q  163 atagagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    |   |||||||||||||||||   |||||| || ||||||||    
T  7307885 acgtagtgcttcatcatcaacttctgtatatgacaagttcaa 7307926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 1600546 - 1600664
Alignment:
Q  196 taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattg 295  Q
    |||||||||||||||||| |||  | |||| |||||||  ||| |||||||||||| |||||||| |  |||| |  ||||||||||||| |  ||||||    
T  1600546 taagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattg 1600645  T
Q  296 ggaaagatggaagctaaca 314  Q
    |||||  ||||||| ||||    
T  1600646 ggaaaattggaagcaaaca 1600664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 65 - 182
Target Start/End: Original strand, 558425 - 558542
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    ||||||||||||| ||||||||||||||| || ||||| ||   |  |||   || |||  ||||||  ||||| |||| ||||||||||||||||| ||    
T  558425 gtgcagttttctagcacatgcttcactcctttatctgtaacgcaaatacaaaattgaagatacagttccaaaagcccacgacaactctttgagatcacat 558524  T
Q  165 agagtgcttcatcatcaa 182  Q
     |||||||||||||||||    
T  558525 ggagtgcttcatcatcaa 558542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 240 - 329
Target Start/End: Complemental strand, 8187019 - 8186930
Alignment:
Q  240 aaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattgggaaagatggaagctaacactttgatgttttcat 329  Q
    |||||||||||| |||||||||||||||||   |||||||||||| ||  |||||||| || | ||||| ||||| || || ||||||||    
T  8187019 aaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaattggggaataaggaagataacatttcgaggttttcat 8186930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 53761941 - 53761892
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcaca 114  Q
    |||||||||||| ||||||| ||||||||||| || ||||||||||||||    
T  53761941 gtgcagttttcttccacatgtttcactcccttgtccgtgacattatcaca 53761892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 1489527 - 1489455
Alignment:
Q  71 ttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccac 143  Q
    ||||||| |||||||||||||||||| ||||||||||||  ||| ||||  ||||| ||||| ||||| ||||    
T  1489527 ttttctagcacatgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagcccac 1489455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 553466 - 553545
Alignment:
Q  125 aacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    |||||||| ||||| |||  |||||||||||| |||| ||  ||||||||||||||||| |||||| | || ||||||||    
T  553466 aacagttgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaa 553545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 570334 - 570417
Alignment:
Q  121 aagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    |||||||||||| ||||| || | |||||||||||| |||| ||||||| |||| | |||||| | |||||| || ||||||||    
T  570334 aagtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaa 570417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 12121629 - 12121490
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    ||||| |||||||||||||||||||||||| | |||||||||  |   || | ||  ||| | ||||| ||||| ||||  |||| ||||||||| |       
T  12121629 gtgcatttttctaccacatgcttcactcccatctctgtgacaaaaaagcaccattccagtgagagttgcaaaagcccacggcaacactttgagattacgg 12121530  T
Q  165 agagtgcttcatcatcaacacttgtatacgataagttcaa 204  Q
    |||||| ||||||||||||| ||||||| || ||||||||    
T  12121529 agagtgtttcatcatcaacatttgtatatgacaagttcaa 12121490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 553406 - 553448
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacat 107  Q
    |||||||||||||||||||| |||||||| || ||||||||||    
T  553406 gtgcagttttctaccacatgattcactcctttatctgtgacat 553448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 1524677 - 1524613
Alignment:
Q  43 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacat 107  Q
    ||||||||||||| | ||| | ||||||||||||| |||||  ||||||||| | ||||||||||    
T  1524677 caaattaatctctctcagttgtgtgcagttttctatcacataattcactcccctctctgtgacat 1524613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 796 - 670
Alignment:
Q  65 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 164  Q
    |||||||||||||| ||||| ||||| || || ||| |||| | ||||||   ||  |||||||||||||| || |||| |||| |||| ||||||||||    
T  796 gtgcagttttctactacatgtttcacaccattctctatgacttcatcacaattttccagtaacagttgtaatagcccacaacaattcttcgagatcatat 697  T
Q  165 agagtgcttcatcatcaacacttgtat 191  Q
    |||||| ||||||||| ||||||||||    
T  696 agagtgtttcatcatcgacacttgtat 670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 15092346 - 15092209
Alignment:
Q  42 gcaaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtcc 141  Q
    |||||||||||||| | | | | ||||||||||||| |||||| |||||||||  |||||||||||||| |||   || |||||| ||||| ||||| ||    
T  15092346 gcaaattaatctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagccc 15092247  T
Q  142 accacaactctttgagatcatatagagtgcttcatcat 179  Q
    || |||| |||||||||||  |||||||| || |||||    
T  15092246 acaacaattctttgagatcgcatagagtgttttatcat 15092209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 10614521 - 10614634
Alignment:
Q  66 tgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatata 165  Q
    ||||||||||||||||||| |||||||| | |||||||||||||| | |   || |||||| ||||| ||||| |||| |||  |||| ||||||| |||    
T  10614521 tgcagttttctaccacatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttcttcgagatcacata 10614620  T
Q  166 gagtgcttcatcat 179  Q
    ||||| || |||||    
T  10614621 gagtgttttatcat 10614634  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 88943 - 88999
Alignment:
Q  196 taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttcttt 252  Q
    |||||||||||||||||| |||  |||||| |||||||| |||  ||||||||||||    
T  88943 taagttcaaatgtctaatcttacaacatctccttaaaatctgatcaataccttcttt 88999  T

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