View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13613_high_3 (Length: 365)
Name: NF13613_high_3
Description: NF13613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13613_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 32266931 - 32267100
Alignment:
| Q |
16 |
ctttcaatgaaggaaaacctttcccacattctttgcagaatttgatcatttcattttgttccaatgtggttnnnnnnnnnnnnnnnnnntgatgattata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32266931 |
ctttcaatgaaggaaaacctttcccacattctttgcagaatttgatcatttcattttgttccaatgtggttgcagcagcagtagcagcatgatgattata |
32267030 |
T |
|
| Q |
116 |
atgatgatgatgagaatgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggttt |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32267031 |
atgatgatgatgagaatgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggttt |
32267100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 258 - 352
Target Start/End: Original strand, 32267170 - 32267264
Alignment:
| Q |
258 |
ttatttctttcttctgtcatgtgtgttctgatgtgaccaccaagagacttcccacaaggaaacctcttgaagcaatatttgcatacaaacgtcct |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32267170 |
ttatttctttcttctgtcatgtgtgttctgatgtgaccaccaagagacttcccacaaggaaacctcttgaagcaatatttgcatacaaacttcct |
32267264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 19301434 - 19301476
Alignment:
| Q |
16 |
ctttcaatgaaggaaaacctttcccacattctttgcagaattt |
58 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
19301434 |
ctttcaatgatggaaaaccttttccacattctttgcagaattt |
19301476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 19301508 - 19301560
Alignment:
| Q |
132 |
tgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggtt |
184 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
19301508 |
tgcacaaacctagttgttttcttgggattctctctaagaccataaataaggtt |
19301560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University