View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13613_low_1 (Length: 424)
Name: NF13613_low_1
Description: NF13613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13613_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 65 - 378
Target Start/End: Complemental strand, 39864027 - 39863714
Alignment:
| Q |
65 |
ttggtcttagtagtgtctttgcaccacatggaaaactcttgaaggcaggtgaaatatgctacaataagaaactagcagaaactcttagtttaattgcaaa |
164 |
Q |
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| T |
39864027 |
ttggtcttagtagtgtatttgcaccacatggaaaactcttgaaaccaggtgaaatatgttataataagaaactaggagcaagtctaaaagcaattgcgaa |
39863928 |
T |
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| Q |
165 |
gtttggtccacaagctttttatggtggaataattggcattaatttagttaaagatgtttagaaggcttgagggatattgacattggaagacctcaaaaag |
264 |
Q |
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| T |
39863927 |
gtttggtccacaagctttgtatggtggaataattggcattaatttagttaaagatgttcagaaggccggcgggatattgacattggaagacctcaaaaag |
39863828 |
T |
|
| Q |
265 |
tacactgttaaataaaaggaacctatatctatagattttcttggattaaagatccttggtatgcctcctccttcaggtgggcctcaaatgatgctggtaa |
364 |
Q |
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| T |
39863827 |
tacactgttaaacaaaaggaacctatatctatagattttcttggattaaagatccttggtatgcctcctccttcaggtgggcctcaaatgatgctggtaa |
39863728 |
T |
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| Q |
365 |
gttgattttctgtg |
378 |
Q |
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| T |
39863727 |
gttgatttgctgtg |
39863714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 67 - 372
Target Start/End: Complemental strand, 27115309 - 27115004
Alignment:
| Q |
67 |
ggtcttagtagtgtctttgcaccacatggaaaactcttgaaggcaggtgaaatatgctacaataagaaactagcagaaactcttagtttaattgcaaagt |
166 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||| | ||||||| ||| |||||||||||||||| | ||||| | || ||||| | |||| |
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| T |
27115309 |
ggtcttcgtagtgtgtttgcaccacatggaaaactcttgaaagtaggtgaactattttacaataagaaactaggaaaaactttaagagtaatttctaagt |
27115210 |
T |
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| Q |
167 |
ttggtccacaagctttttatggtggaataattggcattaatttagttaaagatgtttagaaggcttgagggatattgacattggaagacctcaaaaagta |
266 |
Q |
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| T |
27115209 |
atggtccaaaagctttctatggtggaccaattggcctcaacctagttaaagatgttcagaaggctaaagggatattaactgtggaagacctcaaaagata |
27115110 |
T |
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| Q |
267 |
cactgttaaataaaaggaacctatatctatagattttcttggattaaagatccttggtatgcctcctccttcaggtgggcctcaaatgatgctggtaagt |
366 |
Q |
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| T |
27115109 |
cactgttaaaccaaaggaacctatatctatagattttcttggattaaaactccttagtatgcctcctccttcaggtggacctgcaatgatgctggtaagt |
27115010 |
T |
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| Q |
367 |
tgattt |
372 |
Q |
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|||||| |
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| T |
27115009 |
tgattt |
27115004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 39864266 - 39864221
Alignment:
| Q |
22 |
atacatccattttttccaggatatgtatggtggcaacactactttg |
67 |
Q |
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| T |
39864266 |
atacatccattttttccaggatatgtatggtggcaacattactttg |
39864221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 27115540 - 27115505
Alignment:
| Q |
32 |
tttttccaggatatgtatggtggcaacactactttg |
67 |
Q |
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| T |
27115540 |
tttttccaggatatgtatggtggcaatactactttg |
27115505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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