View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13613_low_4 (Length: 245)
Name: NF13613_low_4
Description: NF13613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13613_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 59 - 229
Target Start/End: Original strand, 45758094 - 45758278
Alignment:
| Q |
59 |
aattaaccatttttgtatcggtaaacaaaaaataatttgtgtact---ctatacgtcacctcacatgaaatagaggcaattgattgatacataatagttt |
155 |
Q |
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| T |
45758094 |
aattaaccatttttgtatcggtaaacaaaaaataatttgtgtactaatctatacgtcacctcacatgaaatagaggcaattgattgatacataatagttt |
45758193 |
T |
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| Q |
156 |
acccaaaatttaaaatccgata-----------aaataattttgttttatttattttcacttagcgattaaatgattaacttgtt |
229 |
Q |
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| T |
45758194 |
acccaaaattaaaaatccgatatataaaataataaataattttgttttatttattttcacttggcgatgaaatgattaacttgtt |
45758278 |
T |
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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 45758065 - 45758096
Alignment:
| Q |
7 |
tagagcaatgaacaagtagaatatatgagaat |
38 |
Q |
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| T |
45758065 |
tagagcaatgaacaagtagaatatatgagaat |
45758096 |
T |
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