View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13614_high_1 (Length: 1102)

Name: NF13614_high_1
Description: NF13614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13614_high_1
NF13614_high_1
[»] chr8 (6 HSPs)
chr8 (1-969)||(34866594-34867562)
chr8 (754-965)||(34389554-34389765)
chr8 (802-958)||(10551685-10551841)
chr8 (12-181)||(34874782-34874950)
chr8 (821-946)||(9519017-9519142)
chr8 (803-908)||(37987529-37987634)
[»] chr1 (5 HSPs)
chr1 (759-965)||(41919796-41920002)
chr1 (771-965)||(24685050-24685243)
chr1 (784-963)||(4651145-4651322)
chr1 (826-929)||(17032835-17032939)
chr1 (856-946)||(31586261-31586351)
[»] chr7 (6 HSPs)
chr7 (759-965)||(38305574-38305780)
chr7 (800-965)||(3420200-3420365)
chr7 (825-965)||(47326411-47326551)
chr7 (826-959)||(37792712-37792845)
chr7 (784-925)||(38484915-38485055)
chr7 (869-925)||(12480298-12480355)
[»] chr4 (8 HSPs)
chr4 (759-965)||(30963777-30963983)
chr4 (784-960)||(35799957-35800133)
chr4 (827-941)||(16501154-16501268)
chr4 (824-945)||(31051212-31051333)
chr4 (869-963)||(46699473-46699566)
chr4 (882-944)||(4305075-4305135)
chr4 (855-957)||(38929125-38929227)
chr4 (884-943)||(7702937-7702994)
[»] chr6 (4 HSPs)
chr6 (749-965)||(16510829-16511045)
chr6 (844-963)||(12793536-12793655)
chr6 (897-963)||(9223377-9223443)
chr6 (709-744)||(16511068-16511103)
[»] chr3 (7 HSPs)
chr3 (771-965)||(19175830-19176023)
chr3 (824-964)||(1653458-1653598)
chr3 (784-965)||(20611145-20611325)
chr3 (848-965)||(17501774-17501891)
chr3 (12-171)||(38382010-38382168)
chr3 (882-962)||(30935940-30936017)
chr3 (895-963)||(25595151-25595219)
[»] chr2 (6 HSPs)
chr2 (761-965)||(39339372-39339574)
chr2 (846-969)||(31902921-31903044)
chr2 (850-963)||(2062247-2062360)
chr2 (856-963)||(22886030-22886137)
chr2 (824-963)||(27739128-27739268)
chr2 (860-925)||(29486398-29486463)
[»] chr5 (2 HSPs)
chr5 (824-923)||(27712379-27712478)
chr5 (803-908)||(697664-697769)


Alignment Details
Target: chr8 (Bit Score: 881; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 881; E-Value: 0
Query Start/End: Original strand, 1 - 969
Target Start/End: Complemental strand, 34867562 - 34866594
Alignment:
Q  1 tatctaaggtcgttgggcaggtaatatgatgtcttgctcatatcatatggattggaaattatgtggctgttgctgtttcatttgcctcaatttcacacaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34867562 tatcaaaggtcgttgggcaggtaatatgatgtcttgctcatatcatatggattggaaattatgtggctgttgctgtttcatttgcctcaatttcacacaa 34867463  T
Q  101 ttcatttgatgtttggaatggagataggaaactggctaaaaagatatggagaagattttgagattgttaaggggagaacaaactggtggtggctcatggt 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34867462 ttcatttgatgtttggaatggagatgggaaactggctaaaaagatatggagaagattttgagattgttaagggtagaacaaactggtggtggctcatggt 34867363  T
Q  201 ggtttgtggtagtagatttagatccggacttggtagttgggttcggatctagatccgaatctttggtagctgctgagaaagatatggcatggtttctctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34867362 ggtttgtggtagtagatttagatccggacttggtagttgggttcggatctagatccgaatctttggtagctgctgagaaagatatggcatggtttctctt 34867263  T
Q  301 tgagattatcttctatctctttctttacgtggcttattacacaaaactccattaattttcattttgaattttatgggttaagatatggcatgtttatcca 400  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34867262 tgagattatcttctatctctttctttacgtggcttgttacacaaaactccattaattttcattttgaattttatgggttaagatatggcatggttatcca 34867163  T
Q  401 cttctgtgataatatttttgaagccgtgaggactctttgcttgtagtatttttattgtgagtcattatagtcatcactcttcaaaattgttgcttaagtg 500  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34867162 cttctgtgatgatatttttgaagccgtgaggactctttgcttgtagtatttttattgtgagtcattatagtcatcactcttcaaaattgttgcttaagtg 34867063  T
Q  501 gcattgtgcatgctaaccagctgccatggaaatgccttatgtgtttcaagaagcttctggaggtcaacgaaaaaacaaatctggtgtctagagttccttg 600  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34867062 gcattatgcatgctaaccggctgccatggaaatgccttatgtgtttcaagaagcttctggaggtcaacgaaaaaacagatctggtgtctagagttccttg 34866963  T
Q  601 gaactagtttgtcagatttggtttgtcggataattgtggtggttcagcttttaatggattttaagagtggttcatgggttggattgcggtgctttggggt 700  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34866962 gaactagttagtcagatttggtttgtcggataattgtggtggttcagcttttaatggattttaagagtggttcatggattggattgcggtgctttggggt 34866863  T
Q  701 gagcttttgggtggtagtttaggttgtgtggtggtggtgatgtgagtaggttgcgggtagtgttgttcaaatccgccgtttttgctccaccattgattct 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34866862 gagcttttgggtggtagtttaggttgtgtggtggtggtgatgtgagtaggttgcgggtagtgttgttcaaatccgccatttttgctccaccattgattct 34866763  T
Q  801 cttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgtt 900  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||    
T  34866762 cttttactacggcgacgaaaacattctccttgtcacaggcgaccgcctttttatgacctgggttgtggttccgcttcaaaccggcgtcgctgcccgtgtt 34866663  T
Q  901 ttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgaggatattt 969  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||    
T  34866662 ttgttgttggatttcgtcttcctctaaatttatgtttgtgttgttgcttgtttcttggtgaggatattt 34866594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 754 - 965
Target Start/End: Complemental strand, 34389765 - 34389554
Alignment:
Q  754 cgggtagtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgccttttta 853  Q
    |||| |||||| |||| ||| ||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||| ||||| || | |    
T  34389765 cgggaagtgttattcagatctgccgtttttgctccaccattggttctcttttactacggcgacgaacacattctccttgtcacaggcagccgctttgtca 34389666  T
Q  854 tgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctcttt 953  Q
    |||||||||||||| |||||||||||| |||||||||| ||||||||||||||| | |||||||| |||||||||||||||||||||||| ||| | |||    
T  34389665 tgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgtggaatttcgtcctcctctagatttatgtttgtgttgttgcttgttt 34389566  T
Q  954 cttggtgaggat 965  Q
    ||||||||||||    
T  34389565 cttggtgaggat 34389554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 802 - 958
Target Start/End: Original strand, 10551685 - 10551841
Alignment:
Q  802 ttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttt 901  Q
    ||||||| ||||||| || |  ||||||||||||| | || | |||||||||||||| |||| ||| ||||||||||||||||||||||| |||||| ||    
T  10551685 ttttactccggtgacaaatgtcttctccttgtcaccgacgacagcctttttatgatcggggtcgtgtttccgcttcaaatcggcgtcgctgcccgtgctt 10551784  T
Q  902 tgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttgg 958  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| || ||||||||    
T  10551785 tgttgttgggtttcgtcttcctctagatctatgtttgtgttgctgtctatttcttgg 10551841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 34874950 - 34874782
Alignment:
Q  12 gttgggcaggtaatatgatgtcttgctcatatcatatggattggaaattatgtggctgttgctgtttcatttgcctcaatttcacacaattcatttgatg 111  Q
    ||||| ||||| || || |||||||||||||   | ||||| ||||||| |||||| ||||| | ||||||||| | |||| ||||| ||| ||||| ||    
T  34874950 gttggacaggtcatgtggtgtcttgctcatacagtttggataggaaattctgtggcggttgcagcttcatttgctttaattgcacaccatttatttggtg 34874851  T
Q  112 tttggaatggagataggaaactggctaaaaagatatggagaagattttgagattgttaaggggagaacaa 181  Q
    |||||||||||||||||||||| |||  |||||||||| |||||||||||||| |||||||| |||||||    
T  34874850 tttggaatggagataggaaactagct-gaaagatatggggaagattttgagatagttaagggcagaacaa 34874782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 821 - 946
Target Start/End: Original strand, 9519017 - 9519142
Alignment:
Q  821 gcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtctt 920  Q
    ||||||||||||||| ||| |||  | || |||  || ||||||||| | |||||||||| | |||||||| |||||||||||||||||| |||||||||    
T  9519017 gcattctccttgtcaaaggtggcaacattgttactatttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctt 9519116  T
Q  921 cctctagatttatgtttgtgttgctg 946  Q
     |||||||||| ||||||| ||||||    
T  9519117 tctctagatttgtgtttgtattgctg 9519142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 803 - 908
Target Start/End: Complemental strand, 37987634 - 37987529
Alignment:
Q  803 tttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgtttt 902  Q
    |||||| ||||| || |||| ||||||||||||| |||||  || | |||| ||||| ||||| | |||||||||| | |||||||||| |||||||| |    
T  37987634 tttacttcggtgccggaagccttctccttgtcaccggcgggtgcgtgtttacgatctaggttgagtttccgcttcagaccggcgtcgctgcccgtgttat 37987535  T
Q  903 gttgtt 908  Q
    ||||||    
T  37987534 gttgtt 37987529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 9e-70; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 9e-70
Query Start/End: Original strand, 759 - 965
Target Start/End: Original strand, 41919796 - 41920002
Alignment:
Q  759 agtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatc 858  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||  ||||||||||||||||||| |||||| ||| ||||||    
T  41919796 agtgttgttcagatccgccgtttttgctccaccattggttctcttttactacggcaacgaacacattctccttgtcacaggctgccgccatttaatgatc 41919895  T
Q  859 tgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttgg 958  Q
    |||||||||||||||||||||| | |||||| | ||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| | ||||||||    
T  41919896 tgggttgtggttccgcttcaaaccagcgtcgttgcccgtgttttgttgtgggatttcatcttcctctagatttatgtttgtgttgttgcttgtttcttgg 41919995  T
Q  959 tgaggat 965  Q
    |||||||    
T  41919996 tgaggat 41920002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 771 - 965
Target Start/End: Complemental strand, 24685243 - 24685050
Alignment:
Q  771 atccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggtt 870  Q
    ||||||| ||||||||||||||||| |||| ||||||||||| ||||||  |||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  24685243 atccgccatttttgctccaccattggttct-ttttactacggcgacgaacacattctccttgtcacaggcggccagctttttatgatatgggttgtggtt 24685145  T
Q  871 ccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgaggat 965  Q
    | |||||||| |||||||||| ||||||||||||||||| |||| ||||  || ||||||||||||||||||| ||| | |||||||||||||||    
T  24685144 ctgcttcaaaccggcgtcgctgcccgtgttttgttgttgaattttgtctctctttagatttatgtttgtgttgttgcttgtttcttggtgaggat 24685050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 784 - 963
Target Start/End: Original strand, 4651145 - 4651322
Alignment:
Q  784 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 883  Q
    ||||||||||||||||||||||||| ||| |||  | |  |||||||| |||| | |||| |||||||||  ||| | |||||  |||||||||||| ||    
T  4651145 gctccaccattgattctcttttactccggcgacagatgtcttctccttatcactgacggctgcctttttacaatcggagttgt--ttccgcttcaaaccg 4651242  T
Q  884 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgagg 963  Q
    | |||||| |  ||||||||||||| | |||||||||||||  ||| |||||||||||||||| || |||||||||||||    
T  4651243 gtgtcgctgcttgtgttttgttgttaggtttcgtcttcctcatgatctatgtttgtgttgctgtctgtttcttggtgagg 4651322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 826 - 929
Target Start/End: Original strand, 17032835 - 17032939
Alignment:
Q  826 ctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgtttt-gttgttggatttcgtcttcctc 924  Q
    ||||||||||| ||||||| | ||||| ||||| |||||||| ||| |||||| | ||| ||| || || ||||||| ||||||||||||||||||||||    
T  17032835 ctccttgtcaccggcggccacatttttttgatcagggttgtgattctgcttcacaccggggtcactacctgtgtttttgttgttggatttcgtcttcctc 17032934  T
Q  925 tagat 929  Q
    |||||    
T  17032935 tagat 17032939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 856 - 946
Target Start/End: Complemental strand, 31586351 - 31586261
Alignment:
Q  856 atctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctg 946  Q
    |||||||| ||| | |||||||| | |||||||||| |||||||||||||||||| ||||||||| |||| ||||| |||  |||||||||    
T  31586351 atctgggtcgtgttcccgcttcagaccggcgtcgctgcccgtgttttgttgttgggtttcgtctttctctggatttgtgtcagtgttgctg 31586261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 2e-67; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 759 - 965
Target Start/End: Original strand, 38305574 - 38305780
Alignment:
Q  759 agtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatc 858  Q
    |||| |||||| |||||||||||||||||||||||||  ||||||||||||||| |||||| |||||||| ||||||||| |||||||||||  |||||     
T  38305574 agtgctgttcatatccgccgtttttgctccaccattggctctcttttactacggcgacgaacgcattctcgttgtcacagtcggccgcctttaaatgata 38305673  T
Q  859 tgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttgg 958  Q
    |||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||    
T  38305674 tgggttgtggttccgcttcaaaccggcgttgctgcctgtgttttgttgttggatttcgtcttcctctagattgatgtttgtgttgttgcttgtttcttgg 38305773  T
Q  959 tgaggat 965  Q
    |||||||    
T  38305774 tgaggat 38305780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 800 - 965
Target Start/End: Complemental strand, 3420365 - 3420200
Alignment:
Q  800 tcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgt 899  Q
    ||||||||||||| |||||| ||||||||| ||| ||||| | ||||||||||||||||| ||||||||||||||||| || |||||||||| | |||||    
T  3420365 tcttttactacggcgacgaacgcattctccctgttacaggagaccgcctttttatgatctaggttgtggttccgcttcgaaccggcgtcgctgctcgtgt 3420266  T
Q  900 tttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgaggat 965  Q
    ||||||||| | ||||||||||||||| |||||||  ||||||| ||| | |||||||||||||||    
T  3420265 tttgttgtttggtttcgtcttcctctaaatttatgcatgtgttgttgcttgtttcttggtgaggat 3420200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 825 - 965
Target Start/End: Complemental strand, 47326551 - 47326411
Alignment:
Q  825 tctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctc 924  Q
    |||||||||||| ||||||||||||| |||||| | ||||||| || | ||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  47326551 tctccttgtcaccggcggccgcctttctatgatttcggttgtgttttcacttcaaatcggtgtcgctgcccgtgttttgttgttggatttcctcttcctc 47326452  T
Q  925 tagatttatgtttgtgttgctgcctctttcttggtgaggat 965  Q
    |||||  || ||||||||||||| | |||||||||||||||    
T  47326451 tagatcaatatttgtgttgctgcttgtttcttggtgaggat 47326411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 826 - 959
Target Start/End: Original strand, 37792712 - 37792845
Alignment:
Q  826 ctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctct 925  Q
    ||||||||||| ||||   ||||||||| ||| ||||||||| |||||||||||| |||||||| |  |||||||||| |||||| |||| |||| ||||    
T  37792712 ctccttgtcaccggcgattgcctttttacgatatgggttgtgtttccgcttcaaaccggcgtcgttgtccgtgttttgctgttgggtttcatctttctct 37792811  T
Q  926 agatttatgtttgtgttgctgcctctttcttggt 959  Q
     |||   |||||||||||||| || |||||||||    
T  37792812 tgatccgtgtttgtgttgctgtctgtttcttggt 37792845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 784 - 925
Target Start/End: Original strand, 38484915 - 38485055
Alignment:
Q  784 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 883  Q
    |||||||||||| |||| ||||||| ||| |||  | |  ||||||||||||| | ||||| |||||||| |||  |||||||| |||||||||||| ||    
T  38484915 gctccaccattgtttctattttactccggcgacagatgtcttctccttgtcactgacggccacctttttacgatg-gggttgtgtttccgcttcaaaccg 38485013  T
Q  884 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctct 925  Q
    |||||||| ||| |||||||||||  | ||||||||||||||    
T  38485014 gcgtcgctgcccatgttttgttgtcaggtttcgtcttcctct 38485055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 869 - 925
Target Start/End: Original strand, 12480298 - 12480355
Alignment:
Q  869 ttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttc-gtcttcctct 925  Q
    |||| ||||||| |||||||||| | |||||||||||||||| |||| ||||||||||    
T  12480298 ttccacttcaaaccggcgtcgctgctcgtgttttgttgttggttttcagtcttcctct 12480355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 2e-67; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 759 - 965
Target Start/End: Original strand, 30963777 - 30963983
Alignment:
Q  759 agtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatc 858  Q
    |||| |||||| ||||||||||||| ||||||||||| ||||||||||||||   |||||| ||||||||||||||||||||| ||  ||||||||||||    
T  30963777 agtgctgttcagatccgccgttttttctccaccattggttctcttttactacaacgacgaacgcattctccttgtcacaggcgaccatctttttatgatc 30963876  T
Q  859 tgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttgg 958  Q
    |||||||||||||| ||||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||    
T  30963877 tgggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcctctagatttatgtttgtgttgttgcttgtttcttgg 30963976  T
Q  959 tgaggat 965  Q
    |||||||    
T  30963977 tgaggat 30963983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 784 - 960
Target Start/End: Original strand, 35799957 - 35800133
Alignment:
Q  784 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 883  Q
    |||||||||||| ||||||| |||| |||||||| | || |||||||||| || | || ||||||||||| | | |||||| || ||||| |||||||||    
T  35799957 gctccaccattggttctcttgtactccggtgacggacgccttctccttgttaccgacgaccgcctttttacgttatgggttatgtttccgtttcaaatcg 35800056  T
Q  884 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtg 960  Q
    |||||| | ||||||||||| |  | | |||||| || || ||||| | | ||||||||||||||| ||||||||||    
T  35800057 gcgtcgttgcccgtgttttgctaataggtttcgtttttctttagatatgtatttgtgttgctgcctgtttcttggtg 35800133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 827 - 941
Target Start/End: Original strand, 16501154 - 16501268
Alignment:
Q  827 tccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctcta 926  Q
    |||||||||| |||||||| |||| || ||| ||||||||| |||| ||||||| |||||||||| ||| |||| ||||||||| ||| |||||||||||    
T  16501154 tccttgtcaccggcggccgtctttatacgatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttttagtcttcctcta 16501253  T
Q  927 gatttatgtttgtgt 941  Q
     |||| |||||||||    
T  16501254 aatttgtgtttgtgt 16501268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 824 - 945
Target Start/End: Complemental strand, 31051333 - 31051212
Alignment:
Q  824 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 923  Q
    |||||||||| |  || ||||||||||||| ||| |||||||||  ||||||||| | |||||||||| |||||||||||||||||| || | |||||||    
T  31051333 ttctccttgttatcggtggccgcctttttacgatttgggttgtgtgtccgcttcagaccggcgtcgctgcccgtgttttgttgttgggttacatcttcct 31051234  T
Q  924 ctagatttatgtttgtgttgct 945  Q
     ||||||| |||| ||||||||    
T  31051233 ttagatttgtgttggtgttgct 31051212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 869 - 963
Target Start/End: Complemental strand, 46699566 - 46699473
Alignment:
Q  869 ttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgagg 963  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||| | ||| | |||||| |||| ||||| | |||||||||||    
T  46699566 ttccgcttcaaatcggcgtcgctgcccgtgtattgttgttggaattcatcttcctattgatctgtgtttg-gttgatgcctgtgtcttggtgagg 46699473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 882 - 944
Target Start/End: Original strand, 4305075 - 4305135
Alignment:
Q  882 cggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgc 944  Q
    |||||||||| ||||||||||||||||||||||||||||   ||||||| |||||||| ||||    
T  4305075 cggcgtcgctgcccgtgttttgttgttggatttcgtctt--gctagattaatgtttgtcttgc 4305135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 855 - 957
Target Start/End: Original strand, 38929125 - 38929227
Alignment:
Q  855 gatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttc 954  Q
    ||||| ||||||| |||||||||| | ||||||| || |||||||||||||||| | | || ||||||| | ||||||  |||| |||| ||||| ||||    
T  38929125 gatctaggttgtgtttccgcttcagaccggcgtcactgcccgtgttttgttgttagttatcatcttccttttgatttagctttgggttgttgcctgtttc 38929224  T
Q  955 ttg 957  Q
    |||    
T  38929225 ttg 38929227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 884 - 943
Target Start/End: Original strand, 7702937 - 7702994
Alignment:
Q  884 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttg 943  Q
    |||||||| || |||||||||||||||||||||||||   ||||||| ||||||||||||    
T  7702937 gcgtcgctgcctgtgttttgttgttggatttcgtctt--gctagattgatgtttgtgttg 7702994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 3e-66; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 749 - 965
Target Start/End: Complemental strand, 16511045 - 16510829
Alignment:
Q  749 ggttgcgggtagtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcct 848  Q
    |||| |||| |||| |||||| | ||||||||||||||||||||||| |||||||||||||||| || |||  |||||||||||||||| ||| | ||||    
T  16511045 ggttccgggaagtgctgttcagaaccgccgtttttgctccaccattgtttctcttttactacggagatgaacacattctccttgtcacaagcgactgcct 16510946  T
Q  849 ttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcc 948  Q
    ||||||||| ||||||||||||| |||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||     
T  16510945 ttttatgatatgggttgtggttctgcttcaaaccggcatcgctgcccgtgttttgttgttggatgtcgtcttcctctagatttatgtttgtgttgttgct 16510846  T
Q  949 tctttcttggtgaggat 965  Q
    | |||||||||||||||    
T  16510845 tgtttcttggtgaggat 16510829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 844 - 963
Target Start/End: Original strand, 12793536 - 12793655
Alignment:
Q  844 cgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttg 943  Q
    |||||||||| ||| ||||||||| || |||||||||  ||||||| | ||||||||||| || |||||||||||||||||| ||| ||  |||||||||    
T  12793536 cgcctttttacgatatgggttgtgttttcgcttcaaactggcgtcgttgcccgtgttttggtgatggatttcgtcttcctctggatctaaatttgtgttg 12793635  T
Q  944 ctgcctctttcttggtgagg 963  Q
    ||| || |||||||||||||    
T  12793636 ctgtctgtttcttggtgagg 12793655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 897 - 963
Target Start/End: Original strand, 9223377 - 9223443
Alignment:
Q  897 tgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgagg 963  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||||  ||| |||||||||||||    
T  9223377 tgttttgttgttggatttcgtcttcctctgaatttgtgtttgtgttgcctcctgtttcttggtgagg 9223443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 709 - 744
Target Start/End: Complemental strand, 16511103 - 16511068
Alignment:
Q  709 gggtggtagtttaggttgtgtggtggtggtgatgtg 744  Q
    |||||| |||||||||||||||||||||||||||||    
T  16511103 gggtggcagtttaggttgtgtggtggtggtgatgtg 16511068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 1e-62; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 771 - 965
Target Start/End: Original strand, 19175830 - 19176023
Alignment:
Q  771 atccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggtt 870  Q
    ||||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  19175830 atccgccgtttttgctccaccattggttct-ttttactacggcgacgaatgcattctccttgtcacaggcggctgcctttttatgatatgggttgtggtt 19175928  T
Q  871 ccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgaggat 965  Q
    || ||||||| |||| ||||| |||||||||||||||||||||| |||| ||| |||||||||||||||| || ||| | |||||||||||||||    
T  19175929 cctcttcaaaccggcatcgctgcccgtgttttgttgttggattttgtctccctttagatttatgtttgtgctgttgcttgtttcttggtgaggat 19176023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 824 - 964
Target Start/End: Complemental strand, 1653598 - 1653458
Alignment:
Q  824 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 923  Q
    ||||||||||||| ||||||  |||| ||| ||||||||||||  || ||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  1653598 ttctccttgtcactggcggcaaccttgttacgatctgggttgtcttttcgcttcaaaccggcgtcgatgcccgtgttttgttgttggatttcgtcttcct 1653499  T
Q  924 ctagatttatgtttgtgttgctgcctctttcttggtgagga 964  Q
    | | |||||||||||||||||||||| |||||| |||||||    
T  1653498 ccatatttatgtttgtgttgctgcctgtttcttcgtgagga 1653458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 784 - 965
Target Start/End: Original strand, 20611145 - 20611325
Alignment:
Q  784 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 883  Q
    |||||||||||| |||||||||||| ||  |||||| || | ||||||||||  ||||||||||||| |||||| | ||||||| || | ||||||| ||    
T  20611145 gctccaccattggttctcttttactccgccgacgaacgcct-ctccttgtcatcggcggccgcctttctatgattttggttgtgctttcacttcaaaccg 20611243  T
Q  884 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgaggat 965  Q
     ||||||| | ||||||||||||||||||||| ||||| ||||||| ||| ||||||||| ||||| |||||||||||||||    
T  20611244 acgtcgctgctcgtgttttgttgttggatttcctcttcatctagatctatatttgtgttgatgcctgtttcttggtgaggat 20611325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 848 - 965
Target Start/End: Complemental strand, 17501891 - 17501774
Alignment:
Q  848 tttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgc 947  Q
    |||||| ||||| ||||||| ||||||||||||  | ||||  |  ||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |    
T  17501891 tttttacgatctaggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcctctagatctatatttgtgttgcttc 17501792  T
Q  948 ctctttcttggtgaggat 965  Q
    || ||| |||||||||||    
T  17501791 ctattttttggtgaggat 17501774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 38382010 - 38382168
Alignment:
Q  12 gttgggcaggtaatatgatgtcttgctcatatcatatggattggaaattatgtggctgttgctgtttcatttgcctcaatttcacacaattcatttgatg 111  Q
    ||||| |||||||| || |||||||||||||  || ||||||||||||| |||||||||||| | |||| ||| || |||||||||  ||  ||||| ||    
T  38382010 gttggtcaggtaatctggtgtcttgctcatacaatttggattggaaattctgtggctgttgcagcttcaattggcttaatttcacatcatctatttggtg 38382109  T
Q  112 tttggaatggagataggaaactggctaaaaagatatggagaagattttgagattgttaag 171  Q
     ||||||||||||||||  | | |||  ||||| ||||||||||||||||||| ||||||    
T  38382110 cttggaatggagataggcgattagct-caaagacatggagaagattttgagatcgttaag 38382168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 882 - 962
Target Start/End: Complemental strand, 30936017 - 30935940
Alignment:
Q  882 cggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgag 962  Q
    ||||||||||  ||||||||||||||||| |||||||   |||||||||||||||| ||||| || || ||||||||||||    
T  30936017 cggcgtcgctgtccgtgttttgttgttgggtttcgtc---ctctagatttatgtttttgttgttgtctgtttcttggtgag 30935940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 895 - 963
Target Start/End: Complemental strand, 25595219 - 25595151
Alignment:
Q  895 cgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgagg 963  Q
    ||||||||||||||   ||||||| |||||||||||| | ||||||||||||| | |||||||||||||    
T  25595219 cgtgttttgttgttatgtttcgtcatcctctagatttgtttttgtgttgctgcttgtttcttggtgagg 25595151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 761 - 965
Target Start/End: Complemental strand, 39339574 - 39339372
Alignment:
Q  761 tgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctg 860  Q
    ||||||||| ||||||||||   |||||||||||| |||||||||||| ||  |||||| || | ||||||||||| ||||||||||||| |||||| |     
T  39339574 tgttgttcagatccgccgttac-gctccaccattggttctcttttactccgccgacgaacgcct-ctccttgtcaccggcggccgcctttctatgatttt 39339477  T
Q  861 ggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtg 960  Q
    ||||||| || | ||||||| || ||||||| | ||||||||||||||||||||| ||||||||||||| ||| |||||||||||| || ||||||||||    
T  39339476 ggttgtgttttcacttcaaaccgacgtcgctgctcgtgttttgttgttggatttcctcttcctctagatctatatttgtgttgctgtctgtttcttggtg 39339377  T
Q  961 aggat 965  Q
    |||||    
T  39339376 aggat 39339372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 846 - 969
Target Start/End: Complemental strand, 31903044 - 31902921
Alignment:
Q  846 cctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgct 945  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |||||| ||||||||    
T  31903044 cctttttatgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgttagtgttgct 31902945  T
Q  946 gcctctttcttggtgaggatattt 969  Q
    |  | ||||||| ||||| |||||    
T  31902944 gtttgtttcttgctgaggctattt 31902921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 850 - 963
Target Start/End: Original strand, 2062247 - 2062360
Alignment:
Q  850 tttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcct 949  Q
    |||| ||||||||||||| |||||||||| | |||||||||| |||||||||||||||||| || | |||| |||| ||| | ||||||||| ||| ||     
T  2062247 tttacgatctgggttgtgtttccgcttcagaccggcgtcgctgcccgtgttttgttgttgggttgcatctttctcttgatctgtgtttgtgtagcttcca 2062346  T
Q  950 ctttcttggtgagg 963  Q
     |||||||||||||    
T  2062347 gtttcttggtgagg 2062360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 856 - 963
Target Start/End: Complemental strand, 22886137 - 22886030
Alignment:
Q  856 atctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttct 955  Q
    ||||||||| || |||||||||| |  |||||||||  ||||||||||||||||| |||| ||||||||| ||| | |   ||||||||||| | |||||    
T  22886137 atctgggttttgtttccgcttcagactggcgtcgctatccgtgttttgttgttgggtttcatcttcctcttgatatgtaactgtgttgctgcttgtttct 22886038  T
Q  956 tggtgagg 963  Q
    ||||||||    
T  22886037 tggtgagg 22886030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 824 - 963
Target Start/End: Original strand, 27739128 - 27739268
Alignment:
Q  824 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 923  Q
    |||| ||||||||  | |||| |||||||  |||||| |||||| ||||||||||   || ||||||| || ||||||||||||| | |||| |||||||    
T  27739128 ttcttcttgtcactagtggccaccttttttcgatctgcgttgtgtttccgcttcagggcgacgtcgctgcctgtgttttgttgtttggtttcatcttcct 27739227  T
Q  924 ctagatttatg-tttgtgttgctgcctctttcttggtgagg 963  Q
    || ||||| || ||||||| ||||| | ||||||| |||||    
T  27739228 cttgatttgtgatttgtgtggctgcttgtttcttgatgagg 27739268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 860 - 925
Target Start/End: Original strand, 29486398 - 29486463
Alignment:
Q  860 gggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctct 925  Q
    |||||||| |||||||||| | |||||||||| |||  ||||||||||| | |||||||| |||||    
T  29486398 gggttgtgtttccgcttcagaccggcgtcgctgcccaagttttgttgtttggtttcgtctccctct 29486463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 824 - 923
Target Start/End: Original strand, 27712379 - 27712478
Alignment:
Q  824 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 923  Q
    ||||||||||||| || ||  |||| |||| ||||| | ||||| |||  ||||| | |||||||| | |||||||||||||||||| |||| |||||||    
T  27712379 ttctccttgtcaccggtggttgcctgtttacgatctagattgtgtttctacttcagaccggcgtcgttgcccgtgttttgttgttgggtttcatcttcct 27712478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 803 - 908
Target Start/End: Original strand, 697664 - 697769
Alignment:
Q  803 tttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgtttt 902  Q
    |||||| ||||| || |||| ||||||||||||| |||    |||| |||| ||||| ||||| | |||||||||| | |||||||||| |||||||  |    
T  697664 tttacttcggtgccggaagccttctccttgtcactggcatgtgcctgtttacgatctaggttgagtttccgcttcagaccggcgtcgctgcccgtgtgct 697763  T
Q  903 gttgtt 908  Q
    ||||||    
T  697764 gttgtt 697769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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