View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13614_high_13 (Length: 316)

Name: NF13614_high_13
Description: NF13614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13614_high_13
NF13614_high_13
[»] chr4 (1 HSPs)
chr4 (7-301)||(56067869-56068163)
[»] chr2 (1 HSPs)
chr2 (23-252)||(9722623-9722852)
[»] chr8 (1 HSPs)
chr8 (99-245)||(38281641-38281787)
[»] chr5 (1 HSPs)
chr5 (42-232)||(41866545-41866735)
[»] chr1 (1 HSPs)
chr1 (87-212)||(39786325-39786450)
[»] chr3 (1 HSPs)
chr3 (34-212)||(23569695-23569873)
[»] chr7 (2 HSPs)
chr7 (165-212)||(22139957-22140004)
chr7 (165-212)||(40539347-40539394)
[»] scaffold0392 (1 HSPs)
scaffold0392 (94-166)||(14740-14812)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 56067869 - 56068163
Alignment:
Q  7 ggagcagagaattactgcaagaaaggcttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagatatcgaaagaagc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  56067869 ggagcagagaattactgcaagaaaggcttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccgacgagagcaaagatatcgaaagaagc 56067968  T
Q  107 taaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56067969 taaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggt 56068068  T
Q  207 gatgatcttgtgtgggccatgactacacttggctttgaagaatatgcagagcctcttaagggttatcttctcaagtatagggaaattgaaggaga 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56068069 gatgatcttgtgtgggccatgactacacttggctttgaagaatatgcagagcctcttaagggttatcttctcaagtatagggaaattgaaggaga 56068163  T

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Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 9722623 - 9722852
Alignment:
Q  23 gcaagaaaggcttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagatatcgaaagaagctaaagaaacgatgcaa 122  Q
    |||||| ||| ||||||| |||||||||||| ||||||||||||| || || ||||| || |  |||||||| || |||||||| ||||||||  | |||    
T  9722623 gcaagataggtttcttccaatagcaaacgtgagtaggatcatgaaaaaggctttaccagcaaacgcaaagatctcaaaagaagcaaaagaaacagtacaa 9722722  T
Q  123 gagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgatcttgtgtggg 222  Q
    ||||||||||||||||| || || |||||||| || ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||| | ||||    
T  9722723 gagtgtgtatcagagtttatcagtttcataactggagaagcttctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatcttctttggg 9722822  T
Q  223 ccatgactacacttggctttgaagaatatg 252  Q
    | ||||| || ||||| |||||||| ||||    
T  9722823 ctatgacaactcttggatttgaagattatg 9722852  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 245
Target Start/End: Original strand, 38281641 - 38281787
Alignment:
Q  99 aaagaagctaaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaa 198  Q
    |||||||| ||||||||| | ||||| ||||| || |||||||| || ||||| || |||||||| ||||| |||||||||| ||| || ||||| ||||    
T  38281641 aaagaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaa 38281740  T
Q  199 taaacggtgatgatcttgtgtgggccatgactacacttggctttgaa 245  Q
    | || |||||||||||| | ||||| ||||| |||||||| ||||||    
T  38281741 ttaatggtgatgatcttctttgggctatgacaacacttggttttgaa 38281787  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 41866545 - 41866735
Alignment:
Q  42 atagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagatatcgaaagaagctaaagaaacgatgcaagagtgtgtatcagagttca 141  Q
    |||||||||||| | || || |||||||| |||||||| || |  || ||||| |||||||| ||||| |||||| |||| || |||||||| |||||||    
T  41866545 atagcaaacgtgagcagaataatgaagaaggcgttaccagcaaacgcgaagatctcgaaagatgctaaggaaacggtgcaggaatgtgtatcggagttca 41866644  T
Q  142 taagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgatcttgtgtgggccatgactac 232  Q
    | |||||||| || |||||||| || || |||||||||| ||||||  | ||||| || ||||| || |||||  | ||||| ||||||||    
T  41866645 tcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctactttgggcgatgactac 41866735  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 39786450 - 39786325
Alignment:
Q  87 gcaaagatatcgaaagaagctaaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagaga 186  Q
    ||||| || |||||||| ||||||||||| |||||||||||||| ||||||||  | || ||  |||| |||||||||||||| |||||||| || ||||    
T  39786450 gcaaaaatctcgaaagatgctaaagaaaccatgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatctgacaagtgtcacaaggaga 39786351  T
Q  187 agaggaagacaataaacggtgatgat 212  Q
    || | |||||| | || |||||||||    
T  39786350 agcgcaagacagtgaatggtgatgat 39786325  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 23569695 - 23569873
Alignment:
Q  34 ttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagatatcgaaagaagctaaagaaacgatgcaagagtgtgtatc 133  Q
    ||||||| |||||||||||  | ||||||||||| |||||  |||| ||||  || ||||| || ||||| || || |||||  | ||||||||||| ||    
T  23569695 ttcttccaatagcaaacgtaagcaggatcatgaaaaaagcactaccagcgaacgcgaagatctcaaaagacgcaaaggaaacagttcaagagtgtgtttc 23569794  T
Q  134 agagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat 212  Q
    ||||||||| |||||||| || || ||||| || || ||||||||    |||||| ||||||| || ||||| ||||||    
T  23569795 agagttcatcagcttcatcaccggcgaagcctccgataagtgtcaacgtgagaagcggaagacgatcaacggcgatgat 23569873  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 22139957 - 22140004
Alignment:
Q  165 tctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat 212  Q
    ||||| |||||||||| ||||||||||||||| || ||||||||||||    
T  22139957 tctgataagtgtcagagagagaagaggaagacgattaacggtgatgat 22140004  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 40539347 - 40539394
Alignment:
Q  165 tctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat 212  Q
    ||||| |||||||||| ||||||||||||||| || ||||||||||||    
T  40539347 tctgataagtgtcagagagagaagaggaagacgattaacggtgatgat 40539394  T

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Target: scaffold0392 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 14812 - 14740
Alignment:
Q  94 tatcgaaagaagctaaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatc 166  Q
    ||||||| ||||| || ||||| |||||||| ||||| || ||||||||||||||| | ||  ||||||||||    
T  14812 tatcgaaggaagcaaaggaaacaatgcaagaatgtgtgtccgagttcataagcttcgtgacgagtgaagcatc 14740  T

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