View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13614_high_3 (Length: 684)

Name: NF13614_high_3
Description: NF13614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13614_high_3
NF13614_high_3
[»] chr2 (3 HSPs)
chr2 (160-592)||(3282316-3282747)
chr2 (44-135)||(3282745-3282836)
chr2 (627-684)||(3282266-3282323)
[»] chr6 (18 HSPs)
chr6 (413-670)||(28095792-28096049)
chr6 (424-672)||(28151637-28151885)
chr6 (466-579)||(26340866-26340979)
chr6 (200-259)||(28094695-28094754)
chr6 (200-308)||(28152983-28153091)
chr6 (323-378)||(28095646-28095701)
chr6 (415-514)||(28239058-28239157)
chr6 (323-389)||(28151925-28151991)
chr6 (430-514)||(25485637-25485721)
chr6 (430-514)||(25513522-25513606)
chr6 (415-514)||(28246039-28246138)
chr6 (415-449)||(28191149-28191183)
chr6 (323-369)||(28191285-28191331)
chr6 (415-449)||(28524982-28525016)
chr6 (323-381)||(28526613-28526671)
chr6 (433-514)||(26658629-26658710)
chr6 (433-514)||(26764600-26764681)
chr6 (430-510)||(26886760-26886840)
[»] scaffold0038 (2 HSPs)
scaffold0038 (415-514)||(39220-39319)
scaffold0038 (415-514)||(46201-46300)
[»] chr5 (1 HSPs)
chr5 (324-373)||(16694041-16694090)
[»] chr8 (1 HSPs)
chr8 (421-514)||(31907803-31907896)
[»] chr4 (1 HSPs)
chr4 (414-514)||(5088424-5088524)


Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 160 - 592
Target Start/End: Complemental strand, 3282747 - 3282316
Alignment:
Q  160 ctgtcttaagaataaaattcaaggatcaaaattatcatataatcacataaccaaactcaaaatagttctggtacttgttttctattgttccatttatgca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3282747 ctgtcttaagaataaaattcaaggatcaaaattatcatataatcacataaccaaactcaaaatagttctggtacttgttttctattgttccatttatgca 3282648  T
Q  260 aaggagatgaaaaacaaataggggaactaaacctacttccagtgctgccaaatacaagaaacccaaaacctgattcagtagcatgcttctacacgaggaa 359  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  3282647 aaggagatgaaaaacaaataggggaactaaaactacttccagtgctgccaaatacaagaaacacaaaacctgattcagtagcatgcttctacacgag-aa 3282549  T
Q  360 ctcaaagattcacaatttaatgcaaacaagattgaggattcttaaagagccatgttcttcgatgcattctggaagaattgtgaaattattctttgataag 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3282548 ctcaaagattcacaatttaatgcaaacaagattgaggattcttaaagagccatgttcttcgatgcattctggaagaattgtgaaattattctttgataag 3282449  T
Q  460 tgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctgttaggttacaatttgttagcacaataacttgtacatttgaggaca 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3282448 tgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctgttaggttacaatttgttagcacaataacttgtacatttgaggaca 3282349  T
Q  560 acatggaacttggtttatcactttgttttggca 592  Q
    |||||||||||||||||||||||||||||||||    
T  3282348 acatggaacttggtttatcactttgttttggca 3282316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 3282836 - 3282745
Alignment:
Q  44 taaagaaatgtgatgattttgtaattaaaatatgaatagcacatccaaaacaacttgttatacagcaaagataatttgatagaattctcctg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3282836 taaagaaatgtgatgattttgtaattaaaatatgaatagcacatccaaaacaacttgttatacagcaaagataatttgatagaattctcctg 3282745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 627 - 684
Target Start/End: Complemental strand, 3282323 - 3282266
Alignment:
Q  627 ttttggcatcatgagagtgctacatggaaacctaagaaaaattccatgtccatctagt 684  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3282323 ttttggcatcatgagagtgctacatggaaacctaagaaaaattccatgtccatctagt 3282266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 2e-45; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 413 - 670
Target Start/End: Original strand, 28095792 - 28096049
Alignment:
Q  413 gttcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatc 512  Q
    |||||| ||||||||| ||||||||||||| |||| | |||||||||| ||||| ||||||||||| ||||||| | | || |||||||||||||||| |    
T  28095792 gttctttgatgcattccggaagaattgtgatattactttttgataagtttaaatttgtcacattagcaaaccacttaaaaattattggaagagattcacc 28095891  T
Q  513 tgttaggttacaatttgttagcacaataacttgtacatttgaggacaacatggaacttggtttatcactttgttttggcaatagacaataacgctgaaca 612  Q
    ||||||||| || | | ||||||||| |  || |||||||||||||| |||||||||||||||||||| ||||||||||||||||     || |||||||    
T  28095892 tgttaggttgcattctattagcacaagagattttacatttgaggacaccatggaacttggtttatcacattgttttggcaatagatggcgaccctgaaca 28095991  T
Q  613 tcaatactggacatttttggcatcatgagagtgctacatggaaacctaagaaaaattc 670  Q
      ||  |  |||| ||||||||||| |||| |||||| ||| ||||||||||| ||||    
T  28095992 agaacccaagacaattttggcatcacgagaatgctacttggtaacctaagaaacattc 28096049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 424 - 672
Target Start/End: Complemental strand, 28151885 - 28151637
Alignment:
Q  424 cattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctgttaggttac 523  Q
    ||||| |||||||||||||||||| ||||  |||||| ||| | ||||| ||| | ||||||| | |||| |||||||| ||||||||||||| |||| |    
T  28151885 cattccggaagaattgtgaaattactcttcaataagtctaagtgtgtcatattggcaaaccacttgagaattattggaaaagattcatctgttcggttgc 28151786  T
Q  524 aatttgttagcacaataacttgtacatttgaggacaacatggaacttggtttatcactttgttttggcaatagacaataacgctgaacatcaatactgga 623  Q
    | ||| |  |||||| |  ||||||||||| ||||| ||||| ||||||||||||||| || |||||||| |||  ||||| |||||||||||| |  ||    
T  28151785 attttctatgcacaagagattgtacatttgtggacaccatgggacttggtttatcactctggtttggcaacagatgataaccctgaacatcaatccaaga 28151686  T
Q  624 catttttggcatcatgagagtgctacatggaaacctaagaaaaattcca 672  Q
    || |||||||||||| ||| |  ||| ||| ||||||||||| ||||||    
T  28151685 caattttggcatcatcagaatattacttggtaacctaagaaacattcca 28151637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 466 - 579
Target Start/End: Original strand, 26340866 - 26340979
Alignment:
Q  466 tatgtcacattagtaaaccacctcagaactattggaagagattcatctgttaggttacaatttgttagcacaataacttgtacatttgaggacaacatgg 565  Q
    |||||||||||   ||||||| | ||  ||||||||||||||||||| |||||||| || | |||||||||||||  ||||||||||||  ||| |||||    
T  26340866 tatgtcacattttcaaaccacttgagcgctattggaagagattcatccgttaggttgcattctgttagcacaatagattgtacatttgaacacaccatgg 26340965  T
Q  566 aacttggtttatca 579  Q
     |||||||||||||    
T  26340966 tacttggtttatca 26340979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 28094695 - 28094754
Alignment:
Q  200 aatcacataaccaaactcaaaatagttctggtacttgttttctattgttccatttatgca 259  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  28094695 aatcgcatgaccaaactcaaaatagttctcgtacttgttttctattgttccaattatgca 28094754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 28153091 - 28152983
Alignment:
Q  200 aatcacataaccaaactcaaaatagttctggtacttgttttctattgttccatttatgcaaaggagatgaaaaacaaataggggaactaaacctacttcc 299  Q
    |||||||| |||||||||| ||||||||| |||||||||||||||| || ||||||||||  ||||  |||||| || |||||  ||||||  ||||| |    
T  28153091 aatcacatcaccaaactcataatagttctcgtacttgttttctattttttcatttatgcagcggaggcgaaaaataattagggatactaaaattactttc 28152992  T
Q  300 agtgctgcc 308  Q
    ||| |||||    
T  28152991 agtcctgcc 28152983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 323 - 378
Target Start/End: Original strand, 28095646 - 28095701
Alignment:
Q  323 caaaacctgattcagtagcatgcttctacacgaggaactcaaagattcacaattta 378  Q
    ||||||||||| |||||||||||||||||| |||||||||||||| || |||||||    
T  28095646 caaaacctgatccagtagcatgcttctacatgaggaactcaaagactcgcaattta 28095701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 415 - 514
Target Start/End: Complemental strand, 28239157 - 28239058
Alignment:
Q  415 tcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    |||| ||||||||||||||||||||||||||||||   ||||| || ||| | || |||||||| | ||||| | | || |||||||||| |||||||||    
T  28239157 tctttgatgcattctggaagaattgtgaaattatttcctgataggtctaactttgacacattagcagaccacatgacaattattggaagaaattcatctg 28239058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 28151991 - 28151925
Alignment:
Q  323 caaaacctgattcagtagcatgcttctacacgaggaactcaaagattcacaatttaatgcaaacaag 389  Q
    |||||||||||||||||||||| ||||||| ||||||||  | |||| |||||| |||||| |||||    
T  28151991 caaaacctgattcagtagcatgtttctacatgaggaacttgatgatttacaattcaatgcagacaag 28151925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 514
Target Start/End: Complemental strand, 25485721 - 25485637
Alignment:
Q  430 ggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    ||||||||||||||||| ||||  ||||||| || | |||||||||||  ||||||| | |||| |||||| ||| |||||||||    
T  25485721 ggaagaattgtgaaattgttctgcgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcatctg 25485637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 514
Target Start/End: Complemental strand, 25513606 - 25513522
Alignment:
Q  430 ggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    ||||||||||||||||| ||||  ||||||| || | |||||||||||  ||||||| | |||| |||||| ||| |||||||||    
T  25513606 ggaagaattgtgaaattgttctccgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcatctg 25513522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 514
Target Start/End: Complemental strand, 28246138 - 28246039
Alignment:
Q  415 tcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    |||| ||||||||||||||||||||||||||| || | ||||| || |||| ||   ||||| | | ||||| | | ||||||||||||| |||||||||    
T  28246138 tctttgatgcattctggaagaattgtgaaattgttttctgataggtttaaaaattctacattcgcagaccacatgacaactattggaagaaattcatctg 28246039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 449
Target Start/End: Complemental strand, 28191183 - 28191149
Alignment:
Q  415 tcttcgatgcattctggaagaattgtgaaattatt 449  Q
    |||| ||||||||||||||||||||||||||||||    
T  28191183 tctttgatgcattctggaagaattgtgaaattatt 28191149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 28191331 - 28191285
Alignment:
Q  323 caaaacctgattcagtagcatgcttctacacgaggaactcaaagatt 369  Q
    |||||||||||||| ||||||| |||||||||||||| |||| ||||    
T  28191331 caaaacctgattcaatagcatgtttctacacgaggaagtcaatgatt 28191285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 449
Target Start/End: Complemental strand, 28525016 - 28524982
Alignment:
Q  415 tcttcgatgcattctggaagaattgtgaaattatt 449  Q
    |||| ||||||||||||||||||||||||||||||    
T  28525016 tctttgatgcattctggaagaattgtgaaattatt 28524982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 28526671 - 28526613
Alignment:
Q  323 caaaacctgattcagtagcatgcttctacacgaggaactcaaagattcacaatttaatg 381  Q
    |||||||||||||| ||||||||||||||| || ||| |||| ||||  ||||||||||    
T  28526671 caaaacctgattcattagcatgcttctacatgacgaagtcaacgatttgcaatttaatg 28526613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 514
Target Start/End: Complemental strand, 26658710 - 26658629
Alignment:
Q  433 agaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    |||||| ||||||| ||||||||||||| || |||| ||||||||  | ||||| | |||| |||||||||| | |||||||    
T  26658710 agaattttgaaattgttctttgataagtttagatatttcacattaacacaccacttgagaagtattggaagacagtcatctg 26658629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 514
Target Start/End: Complemental strand, 26764681 - 26764600
Alignment:
Q  433 agaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    |||||| ||||||| ||||||||||||| || |||| ||||||||  | ||||| | |||| |||||||||| | |||||||    
T  26764681 agaattttgaaattgttctttgataagtttagatatttcacattaacacaccacttgagaagtattggaagacagtcatctg 26764600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 430 - 510
Target Start/End: Complemental strand, 26886840 - 26886760
Alignment:
Q  430 ggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattca 510  Q
    ||||||||| ||||||| ||||||||||||| || || | ||||||||  ||||||| | ||||  ||||||||| |||||    
T  26886840 ggaagaattttgaaattgttctttgataagtctagatgtttcacattaacaaaccacttgagaagcattggaagacattca 26886760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 415 - 514
Target Start/End: Complemental strand, 39319 - 39220
Alignment:
Q  415 tcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    |||| ||||||||||||||||||||||||||||||   ||||| || ||| | || |||||||| | ||||| | | || |||||||||| |||||||||    
T  39319 tctttgatgcattctggaagaattgtgaaattatttcctgataggtctaactttgacacattagcagaccacatgacaattattggaagaaattcatctg 39220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 514
Target Start/End: Complemental strand, 46300 - 46201
Alignment:
Q  415 tcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    |||| ||||||||||||||||||||||||||| || | ||||| || |||| ||   ||||| | | ||||| | | ||||||||||||| |||||||||    
T  46300 tctttgatgcattctggaagaattgtgaaattgttttctgataggtttaaaaattctacattcgcagaccacatgacaactattggaagaaattcatctg 46201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 16694090 - 16694041
Alignment:
Q  324 aaaacctgattcagtagcatgcttctacacgaggaactcaaagattcaca 373  Q
    |||||||||||||||||||||||||| || ||||||  ||||||||||||    
T  16694090 aaaacctgattcagtagcatgcttctgcatgaggaagacaaagattcaca 16694041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 514
Target Start/End: Complemental strand, 31907896 - 31907803
Alignment:
Q  421 atgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    ||||||||||| ||||||||||||||||| |  | ||||||||| | | ||||||||  ||||||  | |||| |||||||| | |||||||||    
T  31907896 atgcattctgggagaattgtgaaattattatgggctaagtgtaattctttcacattaacaaaccatgtgagaattattggaacaaattcatctg 31907803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 414 - 514
Target Start/End: Original strand, 5088424 - 5088524
Alignment:
Q  414 ttcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatct 513  Q
    ||||| || |||||||||||||||| ||||||| ||    ||||||| || ||| |||||||||| |||| | |||||||  || |||||| ||||||||    
T  5088424 ttctttgaggcattctggaagaattttgaaattgttacccgataagtatagataagtcacattagcaaacaatctcagaagaatcggaagacattcatct 5088523  T
Q  514 g 514  Q
    |    
T  5088524 g 5088524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University