View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13614_high_4 (Length: 633)
Name: NF13614_high_4
Description: NF13614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13614_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 19 - 615
Target Start/End: Complemental strand, 4286780 - 4286188
Alignment:
| Q |
19 |
atacattactggggagtagttaccaagtgctagtttattgcatgtagtcaaatttatgattttttgatgtttcgaattgacgtagaattcagtttgtttg |
118 |
Q |
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| T |
4286780 |
atacattactggggagtagttgccaagtgctagtttattgcatgtagtcaaatttatgatttttttatgtttcaaattgacgtagaattcagtttgtttg |
4286681 |
T |
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| Q |
119 |
gatcaactccttctcaagtgctttggggtggactgatgaattaattgtatgtcatgatcaaacaggtggtcataaataaatgttgctgtttattaaacca |
218 |
Q |
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| T |
4286680 |
gatcaactccttctcaagtgctttggggtggactgatgaatt----gtatgtcatgatcaaacaggtggtcataaataaatgttgctgtttattaaacca |
4286585 |
T |
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| Q |
219 |
gttttatgttttgagaccttttatatagcaatgcatgaacattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtcttatgt |
318 |
Q |
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| T |
4286584 |
gttttatgttttgagaccttttatatagcaatgcatgaacattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtcttatgt |
4286485 |
T |
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| Q |
319 |
ccttggttcaatcttcaatataataacttggtggtgagtgattgtaacttatgtatttgcttgcagatgagacctctatcgaacttgtagaacatggtac |
418 |
Q |
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| T |
4286484 |
ctttggttcaatcttcaatataataacttggtggtgagtgattgtaacttatgtatttgcttgcagatgagacctctatcgaactagtagaacatggtac |
4286385 |
T |
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| Q |
419 |
tgttatgcccagtgaaaattgaacagacctctacttttatgtgannnnnnnnngctaaggttatgccatgatgggccaagggaatgataacagagtcttg |
518 |
Q |
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| T |
4286384 |
tgttatgcccggtgaaaattgaacagacctctacgtttatgtgattcttttttgctaaggttatgccatgatgggccaagggaatgataacagagtcttg |
4286285 |
T |
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| Q |
519 |
tcttaaatgaagagttagcttacttaattatcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgtatat |
615 |
Q |
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| T |
4286284 |
tcttaaatgaagagttagcttacttaattatcctcaagttcaatataccgagattgatttttatcaaaaaacttgaatgctctatggaggtgtatat |
4286188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 549 - 611
Target Start/End: Original strand, 21387149 - 21387211
Alignment:
| Q |
549 |
tcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgt |
611 |
Q |
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| T |
21387149 |
tcctcaagttcaataaacccagattcgtttttatcaaaaaattggaatgctctttggaggtgt |
21387211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 17165498 - 17165434
Alignment:
| Q |
250 |
tgcatgaacattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtctt |
314 |
Q |
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| T |
17165498 |
tgcatgaacattgttcttgtaacacactaattagttaagtagatttccttgataatgtcaatctt |
17165434 |
T |
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