View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13614_high_7 (Length: 486)
Name: NF13614_high_7
Description: NF13614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13614_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 311 - 476
Target Start/End: Complemental strand, 20371152 - 20370987
Alignment:
| Q |
311 |
aaagtgctcaacatttctccctcgttcttatttattttttctcactctttcaatgaaatttttctccctcaaccaaatgtttcctcagcccattcttttt |
410 |
Q |
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| T |
20371152 |
aaagtgctcaacatttctccctcgttcttatttttttttcctcactctttcaatgaaatttttctccctcaaccaaatgtttcctcagtccattcttttt |
20371053 |
T |
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| Q |
411 |
ctgccctaactctttacctacaccaccaaacctatcgaagcatgtcacattagtccaacccctttg |
476 |
Q |
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| T |
20371052 |
cttccctaactctttacctacaccaccaaacctattgaagcatgtcacattagtccaacccctttg |
20370987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 20364053 - 20363841
Alignment:
| Q |
18 |
ccatcacattaatggactcaaaagaatttgttgtgatcaaaatacgggcaaagtgaagtcgttcaatattggatctacaagaatctacctttaatagcct |
117 |
Q |
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| T |
20364053 |
ccatcacattaatgg-ctcaa--gaatttatagtgatcaaaataggggcaaagtgaaatcgttcaatattcgatttacaagaatctacctttaatagcct |
20363957 |
T |
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| Q |
118 |
tctatatgtcgaagaaaataaattaagaaagtgaatattccaaacatgcaacataacaccatacagtcgcaaccaagctctcctctttcataaacattat |
217 |
Q |
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| T |
20363956 |
tctatatgtcgaagaaatcaaattaagaaagtgaatattccaaacatgcaacataata-catacagtcgtaaccaag--ctcctctttcataaacattat |
20363860 |
T |
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| Q |
218 |
catccttcgatatccacac |
236 |
Q |
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| T |
20363859 |
catccttcgatatccacac |
20363841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 20371791 - 20371625
Alignment:
| Q |
18 |
ccatcacattaatggactcaaaagaatttgttgtgatcaaaatacgggcaaagtgaagtcgttcaatattggatctacaagaatctacctttaatagcct |
117 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
20371791 |
ccatcacattaatggtctcaaaagaatttgtagtgatcaaaataggggcaaagtgagatcgttcaatatttgatttacaagaatctacctttaatagcct |
20371692 |
T |
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| Q |
118 |
tctatatgtcgaagaaaataaattaagaaagtgaatattccaaacatgcaacataacaccatacagt |
184 |
Q |
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| T |
20371691 |
tctatatgtcgaagaaatcaaattaagaaagtgaatattccaaacatgcaacagaacaccatacagt |
20371625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 20371225 - 20371182
Alignment:
| Q |
250 |
agaattattcttaaccttctctagttatagccttcgtgcatgac |
293 |
Q |
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| T |
20371225 |
agaattattcttaaccttctctagttatagccttcgtgcatgac |
20371182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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