View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13614_high_9 (Length: 353)

Name: NF13614_high_9
Description: NF13614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13614_high_9
NF13614_high_9
[»] chr2 (6 HSPs)
chr2 (64-323)||(34237608-34237875)
chr2 (72-183)||(10862941-10863052)
chr2 (78-183)||(36911285-36911390)
chr2 (94-183)||(9792206-9792296)
chr2 (72-180)||(13293806-13293913)
chr2 (72-116)||(30712153-30712197)
[»] chr8 (3 HSPs)
chr8 (78-181)||(30805979-30806082)
chr8 (18-183)||(3469151-3469325)
chr8 (97-183)||(34347459-34347545)
[»] chr5 (6 HSPs)
chr5 (72-183)||(26637556-26637667)
chr5 (94-183)||(36896680-36896769)
chr5 (72-183)||(39058014-39058128)
chr5 (47-160)||(18934538-18934656)
chr5 (72-183)||(14148942-14149057)
chr5 (18-151)||(10142184-10142322)
[»] chr1 (10 HSPs)
chr1 (18-157)||(12458403-12458547)
chr1 (67-181)||(26089563-26089680)
chr1 (96-185)||(27787383-27787472)
chr1 (68-181)||(36017974-36018087)
chr1 (16-183)||(46835154-46835326)
chr1 (18-183)||(27055656-27055831)
chr1 (98-174)||(27413712-27413790)
chr1 (78-183)||(32708933-32709036)
chr1 (71-124)||(24656309-24656362)
chr1 (72-124)||(35760457-35760509)
[»] scaffold0002 (1 HSPs)
scaffold0002 (72-183)||(452855-452966)
[»] scaffold0538 (2 HSPs)
scaffold0538 (18-183)||(8452-8621)
scaffold0538 (78-183)||(3987-4091)
[»] chr4 (8 HSPs)
chr4 (79-181)||(42884976-42885078)
chr4 (78-183)||(13385757-13385861)
chr4 (72-157)||(40491781-40491866)
chr4 (78-183)||(24831026-24831131)
chr4 (226-286)||(4901389-4901449)
chr4 (18-113)||(42884825-42884925)
chr4 (78-141)||(15478195-15478258)
chr4 (72-141)||(51573418-51573487)
[»] chr7 (3 HSPs)
chr7 (78-183)||(9158743-9158848)
chr7 (72-178)||(2658510-2658615)
chr7 (64-183)||(1398147-1398268)
[»] chr6 (3 HSPs)
chr6 (99-183)||(33483502-33483586)
chr6 (72-174)||(24081670-24081772)
chr6 (78-183)||(31730447-31730551)
[»] chr3 (5 HSPs)
chr3 (18-124)||(93352-93463)
chr3 (71-183)||(27065290-27065401)
chr3 (226-283)||(30860512-30860569)
chr3 (136-183)||(45713858-45713905)
chr3 (79-156)||(25147686-25147763)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 64 - 323
Target Start/End: Complemental strand, 34237875 - 34237608
Alignment:
Q  64 taacaatatacactcacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgaca---ttcactctcatcatt 160  Q
    ||||||| ||| |||||||||||||||||  | |||||||||| ||||||||||||||||| || |||||  |||||||||    |||||||||||||||    
T  34237875 taacaatttacgctcacttgattatttataattatttttataagttttattaaattatttacacccaccttactaattgacgactttcactctcatcatt 34237776  T
Q  161 ataaatattgtttccttaaaagtatatccga--ttgtactnnnnnnncatgtaattatactggcatat---tacactaattccttaatattgttcccaat 255  Q
     |||||||||||| ||||||| ||||||| |  |||||||       |||||||||||||| ||||||   |||||||||||||||||||||||||||||    
T  34237775 ttaaatattgtttacttaaaaatatatcctacattgtactaaaaaaacatgtaattatactagcatatatttacactaattccttaatattgttcccaat 34237676  T
Q  256 ttaatcatttttaaataaaccaacatctattcttttttacaagctagcgtagttaaaaggcttcataa 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34237675 ttaatcatttttaaataaaccaacatctattcttttttacaagctagcgtagttaaaaggcttcataa 34237608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 10863052 - 10862941
Alignment:
Q  72 tacactcacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgt 171  Q
    ||||| ||||||||||| ||  |||||||||||||||||||| ||||| |||| || |||||| |||||| |||  |||| ||||||||  |||||||||    
T  10863052 tacacccacttgattatgtacactcatttttataaattttatcaaattgtttacactcacctcactaatttacacccactttcatcatttcaaatattgt 10862953  T
Q  172 ttccttaaaagt 183  Q
    ||||||||||||    
T  10862952 ttccttaaaagt 10862941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 36911285 - 36911390
Alignment:
Q  78 cacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttcctt 177  Q
    ||||||||||| ||  |||||||||||||||||||| ||||| |||| || |||||| || ||| |||  |||| ||||||||  |||||||||||||||    
T  36911285 cacttgattatatacactcatttttataaattttatcaaattttttacactcacctcactgatttacacccactttcatcattcaaaatattgtttcctt 36911384  T
Q  178 aaaagt 183  Q
     |||||    
T  36911385 caaagt 36911390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 9792296 - 9792206
Alignment:
Q  94 ctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattat-aaatattgtttccttaaaagt 183  Q
    |||||||||||||||||||| ||||| |||| || |||||| |||||| |||| |||| |||||||| | ||||||||||| |||| ||||    
T  9792296 ctcatttttataaattttatcaaattgtttacacccacctcactaatttacatccactttcatcattctaaaatattgttttcttataagt 9792206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 13293806 - 13293913
Alignment:
Q  72 tacactcacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgt 171  Q
    |||| |||||||||||||||  ||| |||||||||||||||| ||||| |||| ||| ||||| |||||| |||  || | | ||||||  | |||||||    
T  13293806 tacattcacttgattatttacactcttttttataaattttatcaaatt-tttacacatacctcactaatttacacacatttttatcattccagatattgt 13293904  T
Q  172 ttccttaaa 180  Q
    |||||||||    
T  13293905 ttccttaaa 13293913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 30712153 - 30712197
Alignment:
Q  72 tacactcacttgattatttatgctcatttttataaattttattaa 116  Q
    ||||||||||||||||||||  ||| ||||||||||| |||||||    
T  30712153 tacactcacttgattatttacactcctttttataaatattattaa 30712197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 78 - 181
Target Start/End: Original strand, 30805979 - 30806082
Alignment:
Q  78 cacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttcctt 177  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||| ||  | ||| |||||| ||| ||||| ||||||||  |||||||||||||||    
T  30805979 cacttgattatttacactcatttttataaattttatcaaattatttacacctatctcactaatttacactcactttcatcattccaaatattgtttcctt 30806078  T
Q  178 aaaa 181  Q
    ||||    
T  30806079 aaaa 30806082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 3469325 - 3469151
Alignment:
Q  18 taaggtgtaaatcagcaagctatactcagctaaaatcattaaggtgtaa-----caatatacactcacttgattatttatgctcatttttataaatttta 112  Q
    |||||||||||| ||||||||| || || ||||||  | ||||||||||     |||  ||||| ||||||||||| ||  |||||||||||||||||||    
T  3469325 taaggtgtaaattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattatatacactcatttttataaatttta 3469226  T
Q  113 ttaaattatttagacacacctcgctaattgaca--ttcactctca--tcattataaatattgtttccttaaaagt 183  Q
    | ||||| |||| |  |||||  |||||| |||   ||||| |||  ||||| ||||||||||||||||||||||    
T  3469225 tcaaattgtttacaaccaccttactaatttacactatcactttcatctcattctaaatattgtttccttaaaagt 3469151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 34347459 - 34347545
Alignment:
Q  97 atttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttccttaaaagt 183  Q
    ||||||||||||||||| ||||| |||| || || ||  |||||| |||  |||| |||||||| ||| ||||||||| ||||||||    
T  34347459 atttttataaattttatcaaattgtttaaactcatcttactaatttacacccactttcatcattctaagtattgtttcattaaaagt 34347545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 26637667 - 26637556
Alignment:
Q  72 tacactcacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgt 171  Q
    ||||| ||||||||||||||| |||||||||||||||||||  ||||| |||| || |||||| |||||| |||  |||| ||||||||  |||||||||    
T  26637667 tacacccacttgattatttatactcatttttataaattttaacaaattgtttacactcacctcactaatttacacccactttcatcatttcaaatattgt 26637568  T
Q  172 ttccttaaaagt 183  Q
    || |||||||||    
T  26637567 ttacttaaaagt 26637556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 36896680 - 36896769
Alignment:
Q  94 ctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttccttaaaagt 183  Q
    |||||||||||||||||||| ||||| |||| || | |||| |||||| |||| |||| |||||||| |||||||||||| |||||||||    
T  36896680 ctcatttttataaattttatcaaattgtttacaccctcctcactaatttacatccactttcatcattctaaatattgttttcttaaaagt 36896769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 39058128 - 39058014
Alignment:
Q  72 tacactcacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacat---tcactctcatcattataaatat 168  Q
    ||||| ||||||||||| ||  |||||||||||||||||||| ||||| |||| |  |||||  |||||| ||||   ||| | |||||||| |||||||    
T  39058128 tacacccacttgattatatacactcatttttataaattttatcaaattgtttacaaccaccttactaatttacattgatcagtttcatcattctaaatat 39058029  T
Q  169 tgtttccttaaaagt 183  Q
    |||||||||||||||    
T  39058028 tgtttccttaaaagt 39058014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 18934656 - 18934538
Alignment:
Q  47 ctaaaatcattaaggtgtaa-----caatatacactcacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaatt 141  Q
    ||||||||||||||||||||     ||| |||||||||||||||||||||   | | ||||| ||| ||||| |||||||||| | ||||||| ||||||    
T  18934656 ctaaaatcattaaggtgtaagttaacaacatacactcacttgattatttacaattacttttaaaaaatttatcaaattatttatatacacctcactaatt 18934557  T
Q  142 gacattcactctcatcatt 160  Q
     |||  |||| ||||||||    
T  18934556 tacacccactttcatcatt 18934538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 14148942 - 14149057
Alignment:
Q  72 tacactcacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgaca--ttcactctca--tcattataaata 167  Q
    ||||| ||||||||||| ||  |||||||||||||||||||| ||||| |||| |  |||||  |||||| |||   ||||| |||  ||||||| ||||    
T  14148942 tacacccacttgattatatacactcatttttataaattttatcaaattgtttacaaccaccttactaatttacactatcactttcatctcattatgaata 14149041  T
Q  168 ttgtttccttaaaagt 183  Q
    ||||||||||||||||    
T  14149042 ttgtttccttaaaagt 14149057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 10142184 - 10142322
Alignment:
Q  18 taaggtgtaaatcagcaagctatactcagctaaaatcattaaggtgtaa-----caatatacactcacttgattatttatgctcatttttataaatttta 112  Q
    |||||||||||| ||||||||| || ||  |||||||||||||||||||     |||  |||||  |||||||||||||  ||  ||||||||| |||||    
T  10142184 taaggtgtaaattagcaagctacacccacttaaaatcattaaggtgtaagttagcaacctacacctacttgattatttacactattttttataagtttta 10142283  T
Q  113 ttaaattatttagacacacctcgctaattgacattcact 151  Q
    | ||||| |||| || ||||||  ||||| ||| |||||    
T  10142284 tgaaattttttacacccacctcaataatttacactcact 10142322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 12458547 - 12458403
Alignment:
Q  18 taaggtgtaaatcagcaagctatactcagctaaaatcattaaggtgtaa-----caatatacactcacttgattatttatgctcatttttataaatttta 112  Q
    |||||||||||| |||||| || || || ||||||||||||||||| ||     |||  ||||| || ||||||||||   |||||||||||||||||||    
T  12458547 taaggtgtaaattagcaagttacacccacctaaaatcattaaggtgcaagttaccaacttacacccatttgattatttgcactcatttttataaatttta 12458448  T
Q  113 ttaaattatttagacacacctcgctaattgacattcactctcatc 157  Q
    | ||||| |||| ||||||||| |||||| ||| ||||| |||||    
T  12458447 tcaaattgtttacacacacctcactaatttacactcactttcatc 12458403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 26089680 - 26089563
Alignment:
Q  67 caatatacactcacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgcta---attgacattcactctcatcattata 163  Q
    |||| ||||| ||||| ||||||||  |||| |||||||| ||||||||||||| ||| || ||| | ||||   ||| ||| ||||| |||||||| ||    
T  26089680 caatttacacccacttaattatttacactcacttttataagttttattaaattacttacactcactttgctagttatttacactcactttcatcattcta 26089581  T
Q  164 aatattgtttccttaaaa 181  Q
    ||||||||||||||||||    
T  26089580 aatattgtttccttaaaa 26089563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 27787472 - 27787383
Alignment:
Q  96 catttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttccttaaaagtat 185  Q
    |||||||||||||||||| ||||| |||| || |||||| ||||||  ||| |||| ||||||||  ||||||| |||| ||||||||||    
T  27787472 catttttataaattttatcaaattgtttacacccacctcactaattttcatccactttcatcattccaaatattatttcattaaaagtat 27787383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 36017974 - 36018087
Alignment:
Q  68 aatatacactcacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaata 167  Q
    |||||||||||| |||||||| ||  ||| |||||||||||||||| ||||| |||| || ||| || ||||||  ||  |||| | ||||||  |||||    
T  36017974 aatatacactcatttgattatatacactcgtttttataaattttatcaaattgtttacacccacttcactaatttgcacccacttttatcatttcaaata 36018073  T
Q  168 ttgtttccttaaaa 181  Q
    ||||||||||||||    
T  36018074 ttgtttccttaaaa 36018087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 46835326 - 46835154
Alignment:
Q  16 attaaggtgtaaatcagcaagctatactcagctaaaatcattaaggtgtaa-----caatatacactcacttgattatttatgctcatttttataaattt 110  Q
    |||||||||||||| ||||||||| |  || ||||||  ||||||||||||     |||   |||| ||||||||||| ||  |||||||||||||||||    
T  46835326 attaaggtgtaaattagcaagctacatccacctaaaaatattaaggtgtaagttagcaaataacacccacttgattatatacactcatttttataaattt 46835227  T
Q  111 tattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttccttaaaagt 183  Q
    ||| ||||| |||| || || ||| |||||| |||  |||| ||||||||  ||||||| |||  ||||||||    
T  46835226 tatcaaattgtttacacccaactcactaatttacacccactttcatcatttcaaatattatttgtttaaaagt 46835154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 27055656 - 27055831
Alignment:
Q  18 taaggtgtaaatcagcaagctatactcagctaaaatcattaaggtgtaa-----caatatacactcacttgattatttatgctcatttttataaatttta 112  Q
    |||||||||||| ||||||||| || || ||||||  | ||||||||||     |||  ||||| ||||||||||| ||  |||||||||||||||||||    
T  27055656 taaggtgtaaattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattatatacactcatttttataaatttta 27055755  T
Q  113 ttaaattatttagacacacctcgctaattgaca---ttcactctca--tcattataaatattgtttccttaaaagt 183  Q
    | ||||| |||| |  |||||  |||||| |||    ||||| |||  ||||| ||||||||||||||||||||||    
T  27055756 tcaaattgtttacaaccaccttactaatttacacttatcactttcatctcattctaaatattgtttccttaaaagt 27055831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 27413712 - 27413790
Alignment:
Q  98 tttttataaattttattaaattatttagacacacctcgcta--attgacattcactctcatcattataaatattgtttc 174  Q
    |||||||||||||||| |||||||||| || |||||| |||  ||| ||| ||||| ||||||||  ||||||||||||    
T  27413712 tttttataaattttatcaaattatttacactcacctcactaatatttacactcactttcatcatttcaaatattgtttc 27413790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 32709036 - 32708933
Alignment:
Q  78 cacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttcctt 177  Q
    ||||||||||| ||  |||||||||||||||||||| ||||| |||  || |||||| |||||| |||  |||| |||| |||  ||||||| ||| |||    
T  32709036 cacttgattatata--ctcatttttataaattttatcaaattgtttgcactcacctcactaatttacacccactttcatgattccaaatattattttctt 32708939  T
Q  178 aaaagt 183  Q
    ||||||    
T  32708938 aaaagt 32708933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 24656309 - 24656362
Alignment:
Q  71 atacactcacttgattatttatgctcatttttataaattttattaaattattta 124  Q
    |||||| ||||| ||||||||| ||||||||||||| ||||| ||||| |||||    
T  24656309 atacacccacttaattatttatactcatttttataatttttaataaataattta 24656362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 35760509 - 35760457
Alignment:
Q  72 tacactcacttgattatttatgctcatttttataaattttattaaattattta 124  Q
    ||||| ||||||||||| ||  |||||||||||||||||||| ||||| ||||    
T  35760509 tacacccacttgattatatacactcatttttataaattttatcaaattgttta 35760457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 452966 - 452855
Alignment:
Q  72 tacactcacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgt 171  Q
    ||||| ||||||||||| ||  |||||||||||||||||||| ||||| |||| || |||||| |||||| | |  || | ||||||||  |||||||||    
T  452966 tacacccacttgattatataaactcatttttataaattttatcaaattgtttacacccacctcactaatttaaacccattttcatcattccaaatattgt 452867  T
Q  172 ttccttaaaagt 183  Q
    ||||||||||||    
T  452866 ttccttaaaagt 452855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0538 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0538
Description:

Target: scaffold0538; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 8621 - 8452
Alignment:
Q  18 taaggtgtaaatcagcaagctatactcagctaaaatcattaaggtgtaa-----caatatacactcacttgattatttatgctcatttttataaatttta 112  Q
    ||||||| || | ||||||||| ||||| || |||||||||||||| ||     |||  ||||| ||||||||||||||  ||||| ||||||| |||||    
T  8621 taaggtgcaagttagcaagctacactcatcttaaatcattaaggtgcaagttagcaacttacacccacttgattatttacactcatgtttataagtttta 8522  T
Q  113 ttaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttccttaaaagt 183  Q
    | ||||| |||| || |||||| |||||| ||| ||||| | ||||||  |||||| ||||||||||||||    
T  8521 tcaaattgtttacactcacctcactaatttacactcact-ttatcatttcaaatatcgtttccttaaaagt 8452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0538; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 4091 - 3987
Alignment:
Q  78 cacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttcctt 177  Q
    ||||||||||||||  ||||| ||||||| |||||| ||||| |||| || |||||| |||||| ||| ||||| | ||||||  |||||||||||||||    
T  4091 cacttgattatttacactcatgtttataagttttatcaaattgtttacactcacctcactaatttacactcact-ttatcatttcaaatattgtttcctt 3993  T
Q  178 aaaagt 183  Q
    ||||||    
T  3992 aaaagt 3987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 42884976 - 42885078
Alignment:
Q  79 acttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttcctta 178  Q
    ||||||||||||| |||||||||||||| |||||| ||||| |||| || |||||| |||||| |||  |||| |||| |||  ||| ||||||||||||    
T  42884976 acttgattatttacgctcatttttataagttttatcaaattgtttacactcacctcactaatttacacccactttcattattccaaaaattgtttcctta 42885075  T
Q  179 aaa 181  Q
    |||    
T  42885076 aaa 42885078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 13385757 - 13385861
Alignment:
Q  78 cacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttcctt 177  Q
    ||||||||||||||  ||||| ||||||| |||||| ||||| |||| || |||||| |||||| ||||||||| | ||||||  ||||||||| |||||    
T  13385757 cacttgattatttacactcatgtttataagttttatcaaattgtttacactcacctcactaatttacattcact-ttatcatttcaaatattgtctcctt 13385855  T
Q  178 aaaagt 183  Q
    ||||||    
T  13385856 aaaagt 13385861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 40491866 - 40491781
Alignment:
Q  72 tacactcacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatc 157  Q
    ||||||||||||||||||||| | ||||||||||||||| |||||||| |||| || ||||||  ||||| |||| |||| |||||    
T  40491866 tacactcacttgattatttatacacatttttataaatttaattaaattgtttacactcacctcattaatttacatccactttcatc 40491781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 24831131 - 24831026
Alignment:
Q  78 cacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttcctt 177  Q
    ||||||||||| ||  ||||||||||||||||| |||||||| |||| || ||||   |||||| |||  |||| ||||| ||  |||||||||||||||    
T  24831131 cacttgattatatacactcatttttataaatttgattaaattgtttacacccaccatactaatttacacacactttcatcgttccaaatattgtttcctt 24831032  T
Q  178 aaaagt 183  Q
    ||||||    
T  24831031 aaaagt 24831026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 4901389 - 4901449
Alignment:
Q  226 ttacactaattccttaatattgttcccaatttaatcatttttaaataaaccaacatctatt 286  Q
    ||||||||||||||||||||| |||||| || |||| |||| ||||||  |||||||||||    
T  4901389 ttacactaattccttaatattcttcccagttcaatccttttaaaataaggcaacatctatt 4901449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 42884825 - 42884925
Alignment:
Q  18 taaggtgtaaatcagcaagctatactcagctaaaatcattaaggtgta-----acaatatacactcacttgattatttatgctcatttttataaatttta 112  Q
    |||||||||||| |||||  || || || |||||||||||||||||||     ||||| |||||||||||||| |||||  ||||||||||| | |||||    
T  42884825 taaggtgtaaattagcaaattacacccacctaaaatcattaaggtgtatgttaacaatctacactcacttgatgatttacactcatttttatcagtttta 42884924  T
Q  113 t 113  Q
    |    
T  42884925 t 42884925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 15478258 - 15478195
Alignment:
Q  78 cacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaatt 141  Q
    ||||||||||| ||  |||||||||||||||||||| ||||| |||| ||| ||||| ||||||    
T  15478258 cacttgattatgtacactcatttttataaattttataaaattctttacacaaacctcactaatt 15478195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 51573418 - 51573487
Alignment:
Q  72 tacactcacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaatt 141  Q
    ||||| ||||||||||||||  ||||||||||||| ||||  ||||| ||||| || |||||| ||||||    
T  51573418 tacacccacttgattatttacactcatttttataacttttgataaataatttacacccacctcactaatt 51573487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 9158848 - 9158743
Alignment:
Q  78 cacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttcctt 177  Q
    ||||||||||| ||  | ||||||||||| |||||| |||||  ||| || |||||| |||||| |||  |||| |||||||| ||||||||||||||||    
T  9158848 cacttgattatatacacccatttttataacttttatcaaattgcttacactcacctcactaatttacacccactttcatcattctaaatattgtttcctt 9158749  T
Q  178 aaaagt 183  Q
    ||||||    
T  9158748 aaaagt 9158743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 178
Target Start/End: Complemental strand, 2658615 - 2658510
Alignment:
Q  72 tacactcacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgt 171  Q
    ||||| ||||||||||| ||  |||||||| ||||||||||| ||||| ||||  | | |||| |||||| |||  |||| ||||||||  |||||||||    
T  2658615 tacacccacttgattatatacactcattttaataaattttatcaaattgtttacccccgcctcactaatttaca-ccactttcatcattccaaatattgt 2658517  T
Q  172 ttcctta 178  Q
    |||||||    
T  2658516 ttcctta 2658510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 1398147 - 1398268
Alignment:
Q  64 taacaatatacactcacttgattatttatgctcatttttataaattttattaa-attatttagacacacctcgctaattgacattcactct-catcatta 161  Q
    |||||| |||||  ||||||||||||||  ||||||||||| |||||| || | ||| |||| || |||||| |||||| ||| ||||| | ||  |||     
T  1398147 taacaacatacatccacttgattatttaaactcatttttatgaattttgttcagattgtttacacccacctcactaatttacactcacttttcacaattc 1398246  T
Q  162 taaatattgtttccttaaaagt 183  Q
     |||||||||||||||||||||    
T  1398247 caaatattgtttccttaaaagt 1398268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 33483586 - 33483502
Alignment:
Q  99 ttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttccttaaaagt 183  Q
    ||||||||||||||| ||||| |||| || |||||| |||||| |||  |||| ||||||||  ||||||||||||||| |||||    
T  33483586 ttttataaattttatcaaattgtttacacccacctcactaatttacacccactttcatcattccaaatattgtttccttgaaagt 33483502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 24081670 - 24081772
Alignment:
Q  72 tacactcacttgattatttatgctcatttttataaattttattaaa-ttatttagacacacctcgctaattgacattcactctcatcattataaatattg 170  Q
    ||||| ||||||||||| ||  ||||||||||| |||||||| ||| || |||| || |||||| |||||| ||| |||||| |||||||  ||||||||    
T  24081670 tacacccacttgattatatacactcatttttatcaattttatcaaatttttttacactcacctcactaatttacactcactc-catcattccaaatattg 24081768  T
Q  171 tttc 174  Q
    ||||    
T  24081769 tttc 24081772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 31730447 - 31730551
Alignment:
Q  78 cacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatcattataaatattgtttcctt 177  Q
    ||||||||||||||  ||||||||||||| |||||  |||| ||||  || |||||| |||||| |||  |||| ||||||||  | ||||||||| |||    
T  31730447 cacttgattatttacactcatttttataacttttaacaaataatttgtacccacctcactaatttacacccactttcatcatttaacatattgttt-ctt 31730545  T
Q  178 aaaagt 183  Q
    ||||||    
T  31730546 aaaagt 31730551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 93352 - 93463
Alignment:
Q  18 taaggtgtaaatcagcaagctatactcagctaaaatcattaaggtgtaa-----caatatacactcacttgattatttatgctcatttttataaatttta 112  Q
    |||||||||||| ||||||||| || || ||||||  | ||||||||||     |||  ||||| ||||||||||| ||  |||||||||||||||||||    
T  93352 taaggtgtaaattagcaagctacacccacctaaaaatactaaggtgtaagttagcaacctacacccacttgattatctacactcatttttataaatttta 93451  T
Q  113 ttaaattattta 124  Q
    | ||||||||||    
T  93452 tcaaattattta 93463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 27065290 - 27065401
Alignment:
Q  71 atacactcacttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcatca-ttataaatatt 169  Q
    |||||| ||||||||||| ||  |||||||||||||||||||| ||||| |||| || |||||| ||| || |||  ||| ||||||| ||  |||||||    
T  27065290 atacacccacttgattatatacactcatttttataaattttatcaaattgtttacactcacctcactattttaca--cacactcatcatttccaaatatt 27065387  T
Q  170 gtttccttaaaagt 183  Q
    ||||||||| ||||    
T  27065388 gtttccttagaagt 27065401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 30860512 - 30860569
Alignment:
Q  226 ttacactaattccttaatattgttcccaatttaatcatttttaaataaaccaacatct 283  Q
    ||||||||||||||| |||||| | || |||||||||||||||||||| |||| ||||    
T  30860512 ttacactaattccttgatattggtacccatttaatcatttttaaataagccaaaatct 30860569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 45713858 - 45713905
Alignment:
Q  136 ctaattgacattcactctcatcattataaatattgtttccttaaaagt 183  Q
    |||||| ||||||||| ||||||||  |||||||||||||||||||||    
T  45713858 ctaatttacattcactttcatcattccaaatattgtttccttaaaagt 45713905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 25147686 - 25147763
Alignment:
Q  79 acttgattatttatgctcatttttataaattttattaaattatttagacacacctcgctaattgacattcactctcat 156  Q
    |||||||||||||  ||||||||||||| |||||  |||| ||||  || |||||| |||||| ||||||||| ||||    
T  25147686 acttgattatttacactcatttttataatttttaacaaataatttgcacccacctcactaatttacattcactttcat 25147763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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