View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13614_low_14 (Length: 260)
Name: NF13614_low_14
Description: NF13614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13614_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 34867539 - 34867777
Alignment:
| Q |
1 |
ttacctgcccaacgaccttagatattgaaacaaaatcttcattcagaataagataaagtgaaagcaataactagtgagtgaatcaggtgtgtgattgagt |
100 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34867539 |
ttacctgcccaacgacctttgatagcgaaacaaaatcttcattcagaataagataaagtgaaagcaataactagtgagtgaatcaggtgtgtgattgagt |
34867638 |
T |
|
| Q |
101 |
ggtaggggatgtttgtcaaatgttatgattgcatcaacctagtccgctaggttaacattatttcaaaatgatcacgctataattgtaaattattatccag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34867639 |
ggtaggggatgtttgtcaaatgttatgattgcatcaacctagtccgctaggttaacattatttcaaaatgatcacgctataattgtaaattattatccag |
34867738 |
T |
|
| Q |
201 |
gtttcatccctccatcaatatttacaaggactagacatt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34867739 |
gtttcatccctccatcaatatttacaaggactagacatt |
34867777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University