View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13614_low_15 (Length: 242)

Name: NF13614_low_15
Description: NF13614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13614_low_15
NF13614_low_15
[»] chr8 (1 HSPs)
chr8 (13-223)||(12508686-12508901)
[»] chr7 (2 HSPs)
chr7 (175-224)||(3160220-3160269)
chr7 (175-223)||(33274345-33274393)
[»] chr4 (2 HSPs)
chr4 (180-223)||(46024054-46024097)
chr4 (180-223)||(46265270-46265313)
[»] chr6 (1 HSPs)
chr6 (184-224)||(4038697-4038737)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 12508901 - 12508686
Alignment:
Q  13 tccaagaatataaactccacttccaaaacaacactcaaatccaaa---accaannnnnnnagctaatctaagcnnnnnnnn--ttatgtctggaactgaa 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||   | |||       ||| |||||||||          |||||||||||||||||    
T  12508901 tccaataatataaactccacttccaaaacaacactcaaatccaaactcaacaatttttttagccaatctaagcaaaaaaaaaattatgtctggaactgaa 12508802  T
Q  108 gctacaaaatatgcttctgctacaaacaacataaccaaatcnnnnnnnccaaacatgagaagattcattggtgtgagacaaaggccatcaggtagatggg 207  Q
    |||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12508801 gctacaaaatatgcttctgctacaaacaacataaccaaatcaaaaaaaccgaacatgagaagattcattggtgtgagacaaaggccatcaggtagatggg 12508702  T
Q  208 tagctgagatcaaaga 223  Q
    ||||||||||||||||    
T  12508701 tagctgagatcaaaga 12508686  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 3160220 - 3160269
Alignment:
Q  175 ttggtgtgagacaaaggccatcaggtagatgggtagctgagatcaaagat 224  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  3160220 ttggtgtgagacaaaggccatcaggaagatgggtagctgagataaaagat 3160269  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 33274393 - 33274345
Alignment:
Q  175 ttggtgtgagacaaaggccatcaggtagatgggtagctgagatcaaaga 223  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||||    
T  33274393 ttggtgttaggcaaaggccatcagggagatgggtagctgagatcaaaga 33274345  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 46024054 - 46024097
Alignment:
Q  180 gtgagacaaaggccatcaggtagatgggtagctgagatcaaaga 223  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||    
T  46024054 gtgaggcaaaggccatcaggaagatggatagctgagatcaaaga 46024097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 46265313 - 46265270
Alignment:
Q  180 gtgagacaaaggccatcaggtagatgggtagctgagatcaaaga 223  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||    
T  46265313 gtgaggcaaaggccatcaggaagatggatagctgagatcaaaga 46265270  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 4038697 - 4038737
Alignment:
Q  184 gacaaaggccatcaggtagatgggtagctgagatcaaagat 224  Q
    ||||||||||||| ||||||||||| |||||||| ||||||    
T  4038697 gacaaaggccatcgggtagatgggttgctgagattaaagat 4038737  T

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