View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13614_low_2 (Length: 733)
Name: NF13614_low_2
Description: NF13614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13614_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 600; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 19 - 724
Target Start/End: Complemental strand, 4174758 - 4174031
Alignment:
| Q |
19 |
tttctcctaccaaagtgtattggtttgtcaccttcaatagttcatctccaggttcttacttctaactacatgcatatacagttaaattacttagtttatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4174758 |
tttctcctaccaaagtgtattggtttgtcaccttcaatagttcatctccaggttcttacttctaactacatgcatatacagttaaattacttagtttatt |
4174659 |
T |
|
| Q |
119 |
gttcaaatgaaaaatagttgagttcaatggtaggtcctaaaacaaccgagccatcggtgctaaagaagcaagctaaggatctagtagaaaactggcctcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
4174658 |
gttcaaatgaaaaatagttgagttcaatggtaggtcctaaaacaaccgagccatcggtgctaaagaagcaagctaaggatcttgtagaaaactggcttcc |
4174559 |
T |
|
| Q |
219 |
agagctactaaacataatggattctacgccggatgagactatagtcttgactccgttgatggatcgatggctttggccatggataagtccacctgtttct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4174558 |
agagctactaaacataatggattctacgccggatgacactatagtcttgactccgttgatggatcgatggctttggccatggataagtccacctgtttct |
4174459 |
T |
|
| Q |
319 |
agaggtagagttgtactcgttggagacgcttggcacccaatgactccaaatattgggcaaggagcatgttgtgctctagaggatgcagtcgttcttgcta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4174458 |
agaggtagagttgtactcgttggagacgcttggcacccaatgactccaaatattgggcaaggagcatgttgtgctctagaggatgcagtcgttcttgcta |
4174359 |
T |
|
| Q |
419 |
aaaagcttgctgcaaccatcaactctgatgacgacacttctatcgaagacgcttttagatcatatggcaatgaaagatggttgcgcatatttccactaac |
518 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4174358 |
aaaagcttgctgcagccattaactctgatgacgacacttctatcgaagacgcttttagatcatatggcaatgaaagatggttgcgcatatttccactaac |
4174259 |
T |
|
| Q |
519 |
catactggcaaaccttgtgggttcgatttcgcagtcggagaacccactggtgtgttatgttaaaaacaatattgtcaaggacagagtcaggaaaaatagt |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
4174258 |
catactggcaaaccttgtgggttcgatttcgcagtcggacaacccactggtgtgttatgttagaaacaatattgtcagggacagagtcaggaaaaatagt |
4174159 |
T |
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| Q |
619 |
taagggt----------------------atagttgtttttatgtttgaaataattcatttgagttaannnnnnnattaaatgcatcaacattatttgta |
696 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
4174158 |
taagggtggcgaaaattttacacatatacatagttgtttttatgtttgaaataattcatttgagttaatttttttattaaatgcatcagcattatttgta |
4174059 |
T |
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| Q |
697 |
atagtctcaatttcattataaatatttt |
724 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
4174058 |
atagtctcaatttcattataaatatttt |
4174031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 595
Target Start/End: Complemental strand, 4170763 - 4170187
Alignment:
| Q |
19 |
tttctcctaccaaagtgtattggtttgtcaccttcaatagttcatctccaggttcttacttctaactaca---tgcatatacagttaaattacttagttt |
115 |
Q |
| |
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||||||| |||||||| ||||||||| || |||||| |||||||||||||||| |||||| | |||| | ||| || |||||||||| ||||| |
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| T |
4170763 |
tttctccaaccaaagtctattggtttatctgcttcaacagttcatctccaggttgttacttgttactaataagtccatgtatgattaaattactgagttt |
4170664 |
T |
|
| Q |
116 |
attgttcaaatgaaaaatagttgagttcaatggtaggtcctaaaacaaccgagccatcggtgctaaagaagcaagctaaggatctagtagaaaactggcc |
215 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4170663 |
attgttcaaatgaaaaatagttgagttcaatggcaggtcctaaaacaactgagccatcggtgctaaagaagcaagctaaggatctagtggaaaactggcc |
4170564 |
T |
|
| Q |
216 |
tccagagctactaaacataatggattctacgccggatgagactatagtcttgactccgttgatggatcgatggctttggccatggataagtccacctgtt |
315 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||| ||||||||||||||||||||| | ||||||||||||| |
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| T |
4170563 |
tccagagctactaaacataatggattctacaccggatgacactataatcaggactccgttggtggatcgatggctttggccatcaacaagtccacctgtt |
4170464 |
T |
|
| Q |
316 |
tctagaggtagagttgtactcgttggagacgcttggcacccaatgactccaaatattgggcaaggagcatgttgtgctctagaggatgcagtcgttcttg |
415 |
Q |
| |
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||| ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||| |
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| T |
4170463 |
tctgcaggtagagttgtactcgttggtgatgcttggcacccaatgactccaaatcttgggcaaggagcttgttgtgctcttgaggatgcagtggttcttg |
4170364 |
T |
|
| Q |
416 |
ctaaaaagcttgctgcaaccatcaactctgatgacgacacttctatcgaagacgcttttagatcatatggcaatgaaagatggttgcgcatatttccact |
515 |
Q |
| |
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||||||||||||||||| | || | |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4170363 |
ctaaaaagcttgctgcagcaattgattctgat---gactcttctatcgaagacgcttttagatcatatggcaatgaaagatggccgcgcatatttccact |
4170267 |
T |
|
| Q |
516 |
aaccatactggcaaaccttgtgggttcgatttcgcagtcggagaacccactggtgtgttatgttaaaaacaatattgtca |
595 |
Q |
| |
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|||||||| |||||| |||||||||||| || ||||| ||| ||||| |||||||||| ||||| ||||||||||||| |
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| T |
4170266 |
aaccatacgggcaaatcttgtgggttcggctttgcagtgggataacccgctggtgtgttctgttaggaacaatattgtca |
4170187 |
T |
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