View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13614_low_3 (Length: 684)

Name: NF13614_low_3
Description: NF13614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13614_low_3
NF13614_low_3
[»] chr2 (3 HSPs)
chr2 (160-592)||(3282316-3282747)
chr2 (44-135)||(3282745-3282836)
chr2 (627-684)||(3282266-3282323)
[»] chr6 (18 HSPs)
chr6 (413-670)||(28095792-28096049)
chr6 (424-672)||(28151637-28151885)
chr6 (466-579)||(26340866-26340979)
chr6 (200-259)||(28094695-28094754)
chr6 (200-308)||(28152983-28153091)
chr6 (323-378)||(28095646-28095701)
chr6 (415-514)||(28239058-28239157)
chr6 (323-389)||(28151925-28151991)
chr6 (430-514)||(25485637-25485721)
chr6 (430-514)||(25513522-25513606)
chr6 (415-514)||(28246039-28246138)
chr6 (415-449)||(28191149-28191183)
chr6 (323-369)||(28191285-28191331)
chr6 (415-449)||(28524982-28525016)
chr6 (323-381)||(28526613-28526671)
chr6 (433-514)||(26658629-26658710)
chr6 (433-514)||(26764600-26764681)
chr6 (430-510)||(26886760-26886840)
[»] scaffold0038 (2 HSPs)
scaffold0038 (415-514)||(39220-39319)
scaffold0038 (415-514)||(46201-46300)
[»] chr5 (1 HSPs)
chr5 (324-373)||(16694041-16694090)
[»] chr8 (1 HSPs)
chr8 (421-514)||(31907803-31907896)
[»] chr4 (1 HSPs)
chr4 (414-514)||(5088424-5088524)


Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 160 - 592
Target Start/End: Complemental strand, 3282747 - 3282316
Alignment:
Q  160 ctgtcttaagaataaaattcaaggatcaaaattatcatataatcacataaccaaactcaaaatagttctggtacttgttttctattgttccatttatgca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3282747 ctgtcttaagaataaaattcaaggatcaaaattatcatataatcacataaccaaactcaaaatagttctggtacttgttttctattgttccatttatgca 3282648  T
Q  260 aaggagatgaaaaacaaataggggaactaaacctacttccagtgctgccaaatacaagaaacccaaaacctgattcagtagcatgcttctacacgaggaa 359  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  3282647 aaggagatgaaaaacaaataggggaactaaaactacttccagtgctgccaaatacaagaaacacaaaacctgattcagtagcatgcttctacacgag-aa 3282549  T
Q  360 ctcaaagattcacaatttaatgcaaacaagattgaggattcttaaagagccatgttcttcgatgcattctggaagaattgtgaaattattctttgataag 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3282548 ctcaaagattcacaatttaatgcaaacaagattgaggattcttaaagagccatgttcttcgatgcattctggaagaattgtgaaattattctttgataag 3282449  T
Q  460 tgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctgttaggttacaatttgttagcacaataacttgtacatttgaggaca 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3282448 tgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctgttaggttacaatttgttagcacaataacttgtacatttgaggaca 3282349  T
Q  560 acatggaacttggtttatcactttgttttggca 592  Q
    |||||||||||||||||||||||||||||||||    
T  3282348 acatggaacttggtttatcactttgttttggca 3282316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 3282836 - 3282745
Alignment:
Q  44 taaagaaatgtgatgattttgtaattaaaatatgaatagcacatccaaaacaacttgttatacagcaaagataatttgatagaattctcctg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3282836 taaagaaatgtgatgattttgtaattaaaatatgaatagcacatccaaaacaacttgttatacagcaaagataatttgatagaattctcctg 3282745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 627 - 684
Target Start/End: Complemental strand, 3282323 - 3282266
Alignment:
Q  627 ttttggcatcatgagagtgctacatggaaacctaagaaaaattccatgtccatctagt 684  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3282323 ttttggcatcatgagagtgctacatggaaacctaagaaaaattccatgtccatctagt 3282266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 2e-45; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 413 - 670
Target Start/End: Original strand, 28095792 - 28096049
Alignment:
Q  413 gttcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatc 512  Q
    |||||| ||||||||| ||||||||||||| |||| | |||||||||| ||||| ||||||||||| ||||||| | | || |||||||||||||||| |    
T  28095792 gttctttgatgcattccggaagaattgtgatattactttttgataagtttaaatttgtcacattagcaaaccacttaaaaattattggaagagattcacc 28095891  T
Q  513 tgttaggttacaatttgttagcacaataacttgtacatttgaggacaacatggaacttggtttatcactttgttttggcaatagacaataacgctgaaca 612  Q
    ||||||||| || | | ||||||||| |  || |||||||||||||| |||||||||||||||||||| ||||||||||||||||     || |||||||    
T  28095892 tgttaggttgcattctattagcacaagagattttacatttgaggacaccatggaacttggtttatcacattgttttggcaatagatggcgaccctgaaca 28095991  T
Q  613 tcaatactggacatttttggcatcatgagagtgctacatggaaacctaagaaaaattc 670  Q
      ||  |  |||| ||||||||||| |||| |||||| ||| ||||||||||| ||||    
T  28095992 agaacccaagacaattttggcatcacgagaatgctacttggtaacctaagaaacattc 28096049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 424 - 672
Target Start/End: Complemental strand, 28151885 - 28151637
Alignment:
Q  424 cattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctgttaggttac 523  Q
    ||||| |||||||||||||||||| ||||  |||||| ||| | ||||| ||| | ||||||| | |||| |||||||| ||||||||||||| |||| |    
T  28151885 cattccggaagaattgtgaaattactcttcaataagtctaagtgtgtcatattggcaaaccacttgagaattattggaaaagattcatctgttcggttgc 28151786  T
Q  524 aatttgttagcacaataacttgtacatttgaggacaacatggaacttggtttatcactttgttttggcaatagacaataacgctgaacatcaatactgga 623  Q
    | ||| |  |||||| |  ||||||||||| ||||| ||||| ||||||||||||||| || |||||||| |||  ||||| |||||||||||| |  ||    
T  28151785 attttctatgcacaagagattgtacatttgtggacaccatgggacttggtttatcactctggtttggcaacagatgataaccctgaacatcaatccaaga 28151686  T
Q  624 catttttggcatcatgagagtgctacatggaaacctaagaaaaattcca 672  Q
    || |||||||||||| ||| |  ||| ||| ||||||||||| ||||||    
T  28151685 caattttggcatcatcagaatattacttggtaacctaagaaacattcca 28151637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 466 - 579
Target Start/End: Original strand, 26340866 - 26340979
Alignment:
Q  466 tatgtcacattagtaaaccacctcagaactattggaagagattcatctgttaggttacaatttgttagcacaataacttgtacatttgaggacaacatgg 565  Q
    |||||||||||   ||||||| | ||  ||||||||||||||||||| |||||||| || | |||||||||||||  ||||||||||||  ||| |||||    
T  26340866 tatgtcacattttcaaaccacttgagcgctattggaagagattcatccgttaggttgcattctgttagcacaatagattgtacatttgaacacaccatgg 26340965  T
Q  566 aacttggtttatca 579  Q
     |||||||||||||    
T  26340966 tacttggtttatca 26340979  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 28094695 - 28094754
Alignment:
Q  200 aatcacataaccaaactcaaaatagttctggtacttgttttctattgttccatttatgca 259  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  28094695 aatcgcatgaccaaactcaaaatagttctcgtacttgttttctattgttccaattatgca 28094754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 28153091 - 28152983
Alignment:
Q  200 aatcacataaccaaactcaaaatagttctggtacttgttttctattgttccatttatgcaaaggagatgaaaaacaaataggggaactaaacctacttcc 299  Q
    |||||||| |||||||||| ||||||||| |||||||||||||||| || ||||||||||  ||||  |||||| || |||||  ||||||  ||||| |    
T  28153091 aatcacatcaccaaactcataatagttctcgtacttgttttctattttttcatttatgcagcggaggcgaaaaataattagggatactaaaattactttc 28152992  T
Q  300 agtgctgcc 308  Q
    ||| |||||    
T  28152991 agtcctgcc 28152983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 323 - 378
Target Start/End: Original strand, 28095646 - 28095701
Alignment:
Q  323 caaaacctgattcagtagcatgcttctacacgaggaactcaaagattcacaattta 378  Q
    ||||||||||| |||||||||||||||||| |||||||||||||| || |||||||    
T  28095646 caaaacctgatccagtagcatgcttctacatgaggaactcaaagactcgcaattta 28095701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 415 - 514
Target Start/End: Complemental strand, 28239157 - 28239058
Alignment:
Q  415 tcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    |||| ||||||||||||||||||||||||||||||   ||||| || ||| | || |||||||| | ||||| | | || |||||||||| |||||||||    
T  28239157 tctttgatgcattctggaagaattgtgaaattatttcctgataggtctaactttgacacattagcagaccacatgacaattattggaagaaattcatctg 28239058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 28151991 - 28151925
Alignment:
Q  323 caaaacctgattcagtagcatgcttctacacgaggaactcaaagattcacaatttaatgcaaacaag 389  Q
    |||||||||||||||||||||| ||||||| ||||||||  | |||| |||||| |||||| |||||    
T  28151991 caaaacctgattcagtagcatgtttctacatgaggaacttgatgatttacaattcaatgcagacaag 28151925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 514
Target Start/End: Complemental strand, 25485721 - 25485637
Alignment:
Q  430 ggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    ||||||||||||||||| ||||  ||||||| || | |||||||||||  ||||||| | |||| |||||| ||| |||||||||    
T  25485721 ggaagaattgtgaaattgttctgcgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcatctg 25485637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 514
Target Start/End: Complemental strand, 25513606 - 25513522
Alignment:
Q  430 ggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    ||||||||||||||||| ||||  ||||||| || | |||||||||||  ||||||| | |||| |||||| ||| |||||||||    
T  25513606 ggaagaattgtgaaattgttctccgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcatctg 25513522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 514
Target Start/End: Complemental strand, 28246138 - 28246039
Alignment:
Q  415 tcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    |||| ||||||||||||||||||||||||||| || | ||||| || |||| ||   ||||| | | ||||| | | ||||||||||||| |||||||||    
T  28246138 tctttgatgcattctggaagaattgtgaaattgttttctgataggtttaaaaattctacattcgcagaccacatgacaactattggaagaaattcatctg 28246039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 449
Target Start/End: Complemental strand, 28191183 - 28191149
Alignment:
Q  415 tcttcgatgcattctggaagaattgtgaaattatt 449  Q
    |||| ||||||||||||||||||||||||||||||    
T  28191183 tctttgatgcattctggaagaattgtgaaattatt 28191149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 28191331 - 28191285
Alignment:
Q  323 caaaacctgattcagtagcatgcttctacacgaggaactcaaagatt 369  Q
    |||||||||||||| ||||||| |||||||||||||| |||| ||||    
T  28191331 caaaacctgattcaatagcatgtttctacacgaggaagtcaatgatt 28191285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 449
Target Start/End: Complemental strand, 28525016 - 28524982
Alignment:
Q  415 tcttcgatgcattctggaagaattgtgaaattatt 449  Q
    |||| ||||||||||||||||||||||||||||||    
T  28525016 tctttgatgcattctggaagaattgtgaaattatt 28524982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 28526671 - 28526613
Alignment:
Q  323 caaaacctgattcagtagcatgcttctacacgaggaactcaaagattcacaatttaatg 381  Q
    |||||||||||||| ||||||||||||||| || ||| |||| ||||  ||||||||||    
T  28526671 caaaacctgattcattagcatgcttctacatgacgaagtcaacgatttgcaatttaatg 28526613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 514
Target Start/End: Complemental strand, 26658710 - 26658629
Alignment:
Q  433 agaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    |||||| ||||||| ||||||||||||| || |||| ||||||||  | ||||| | |||| |||||||||| | |||||||    
T  26658710 agaattttgaaattgttctttgataagtttagatatttcacattaacacaccacttgagaagtattggaagacagtcatctg 26658629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 514
Target Start/End: Complemental strand, 26764681 - 26764600
Alignment:
Q  433 agaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    |||||| ||||||| ||||||||||||| || |||| ||||||||  | ||||| | |||| |||||||||| | |||||||    
T  26764681 agaattttgaaattgttctttgataagtttagatatttcacattaacacaccacttgagaagtattggaagacagtcatctg 26764600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 430 - 510
Target Start/End: Complemental strand, 26886840 - 26886760
Alignment:
Q  430 ggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattca 510  Q
    ||||||||| ||||||| ||||||||||||| || || | ||||||||  ||||||| | ||||  ||||||||| |||||    
T  26886840 ggaagaattttgaaattgttctttgataagtctagatgtttcacattaacaaaccacttgagaagcattggaagacattca 26886760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 415 - 514
Target Start/End: Complemental strand, 39319 - 39220
Alignment:
Q  415 tcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    |||| ||||||||||||||||||||||||||||||   ||||| || ||| | || |||||||| | ||||| | | || |||||||||| |||||||||    
T  39319 tctttgatgcattctggaagaattgtgaaattatttcctgataggtctaactttgacacattagcagaccacatgacaattattggaagaaattcatctg 39220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 514
Target Start/End: Complemental strand, 46300 - 46201
Alignment:
Q  415 tcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    |||| ||||||||||||||||||||||||||| || | ||||| || |||| ||   ||||| | | ||||| | | ||||||||||||| |||||||||    
T  46300 tctttgatgcattctggaagaattgtgaaattgttttctgataggtttaaaaattctacattcgcagaccacatgacaactattggaagaaattcatctg 46201  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 16694090 - 16694041
Alignment:
Q  324 aaaacctgattcagtagcatgcttctacacgaggaactcaaagattcaca 373  Q
    |||||||||||||||||||||||||| || ||||||  ||||||||||||    
T  16694090 aaaacctgattcagtagcatgcttctgcatgaggaagacaaagattcaca 16694041  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 514
Target Start/End: Complemental strand, 31907896 - 31907803
Alignment:
Q  421 atgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatctg 514  Q
    ||||||||||| ||||||||||||||||| |  | ||||||||| | | ||||||||  ||||||  | |||| |||||||| | |||||||||    
T  31907896 atgcattctgggagaattgtgaaattattatgggctaagtgtaattctttcacattaacaaaccatgtgagaattattggaacaaattcatctg 31907803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 414 - 514
Target Start/End: Original strand, 5088424 - 5088524
Alignment:
Q  414 ttcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccacctcagaactattggaagagattcatct 513  Q
    ||||| || |||||||||||||||| ||||||| ||    ||||||| || ||| |||||||||| |||| | |||||||  || |||||| ||||||||    
T  5088424 ttctttgaggcattctggaagaattttgaaattgttacccgataagtatagataagtcacattagcaaacaatctcagaagaatcggaagacattcatct 5088523  T
Q  514 g 514  Q
    |    
T  5088524 g 5088524  T

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